Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k09f
         (566 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46940.1 68416.m05095 deoxyuridine 5'-triphosphate nucleotido...    77   1e-14
At5g55820.1 68418.m06956 expressed protein                             27   8.7  
At1g75180.3 68414.m08734 expressed protein                             27   8.7  
At1g75180.2 68414.m08733 expressed protein                             27   8.7  
At1g75180.1 68414.m08732 expressed protein                             27   8.7  

>At3g46940.1 68416.m05095 deoxyuridine 5'-triphosphate
           nucleotidohydrolase family contains Pfam profile:
           PF00692 deoxyuridine 5'-triphosphate nucleotidohydrolase
          Length = 166

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 37/64 (57%), Positives = 42/64 (65%)
 Frame = +3

Query: 375 PILKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVA 554
           P  K  +LSE A  P RGS  +AG DL SA D  VPARGK L+ TDL I +P G Y R+A
Sbjct: 27  PFFKVKKLSEKAVIPTRGSPLSAGYDLSSAVDSKVPARGKALIPTDLSIAVPEGTYARIA 86

Query: 555 PRSG 566
           PRSG
Sbjct: 87  PRSG 90


>At5g55820.1 68418.m06956 expressed protein
          Length = 1826

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +3

Query: 360 SGKIQPILKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPG 536
           S ++QP+   T +  N    +    +++ I+  SA DY   + G      D Q+E+  G
Sbjct: 719 SKEVQPLGSLTEVGSNQSHGIISRARSSLIEEESANDYKALSDGSNHKSADKQLEVREG 777


>At1g75180.3 68414.m08734 expressed protein
          Length = 315

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 448 IPAAFSEPLTG*KAFSLSLVNFRIGWILPDILNI 347
           +P++ S PL   + F + + NF++    P++L I
Sbjct: 29  LPSSLSSPLLDLRVFYVRISNFKVDHSTPEVLTI 62


>At1g75180.2 68414.m08733 expressed protein
          Length = 315

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 448 IPAAFSEPLTG*KAFSLSLVNFRIGWILPDILNI 347
           +P++ S PL   + F + + NF++    P++L I
Sbjct: 29  LPSSLSSPLLDLRVFYVRISNFKVDHSTPEVLTI 62


>At1g75180.1 68414.m08732 expressed protein
          Length = 315

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 448 IPAAFSEPLTG*KAFSLSLVNFRIGWILPDILNI 347
           +P++ S PL   + F + + NF++    P++L I
Sbjct: 29  LPSSLSSPLLDLRVFYVRISNFKVDHSTPEVLTI 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,485,302
Number of Sequences: 28952
Number of extensions: 180418
Number of successful extensions: 329
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)