Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k08r
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...    28   4.0  
At4g35070.1 68417.m04978 expressed protein                             27   5.3  
At4g14280.1 68417.m02201 hypothetical protein                          27   7.0  
At1g73810.1 68414.m08546 expressed protein contains Pfam profile...    27   7.0  
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq...    27   9.3  

>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = +1

Query: 166 PAPDKADSRELGHPYFPGSD---GPDASTGGRRVPHVDSLRAGCRS 294
           PA  K   + LG P+  G D   GP    G RR    D  R G +S
Sbjct: 89  PATLKKQQKPLGRPFGGGGDRPRGPPRGDGERRFGDRDGYRGGPKS 134


>At4g35070.1 68417.m04978 expressed protein 
          Length = 265

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = -3

Query: 178 CRGRGRFNFRHSPVQKLSTKRISLQCTDLGTLNLICPPVKHICICL 41
           C G G  N    P +K+        C   G   ++  P +H+C C+
Sbjct: 197 CGGEGDGN--SLPAKKMKMSSCCCNCGSNGVTRVLFLPCRHLCCCM 240


>At4g14280.1 68417.m02201 hypothetical protein
          Length = 798

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +2

Query: 203 TPTSRARTALTRLPAGAVYLTLTACELAVAARVTTKLRNSLSF 331
           TP  R  T L  +PA    LTL A  LAV  ++ + L  SL F
Sbjct: 27  TPEPRRPTQLPPVPAPEKKLTLFALRLAVLEKIASGL-GSLGF 68


>At1g73810.1 68414.m08546 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 418

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -3

Query: 202 VPVRDCPPCRGRGRFNFRHSPV 137
           V V D P   GRGR+N R SPV
Sbjct: 262 VDVYDLPGPAGRGRYNRRMSPV 283


>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
           ubiquitin ligase, contains two RING finger domain;
           identical to PRT1 [Arabidopsis thaliana] GI:3319884
          Length = 410

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -3

Query: 193 RDC--PPCRGRGRFNFRHSPVQKLSTKRISLQCTDLGTLNLICPPV 62
           +DC   P +  GRFN +H+P  +L   R      +  ++ ++  PV
Sbjct: 339 KDCYETPSKVPGRFNQQHTPDHRLELARSPQVLINFNSIGILLGPV 384


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,361,835
Number of Sequences: 28952
Number of extensions: 169422
Number of successful extensions: 376
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)