Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k08f
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF039720-3|AAB96697.1|  281|Caenorhabditis elegans Collagen prot...    28   5.1  
Z68507-1|CAA92826.1|  337|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    27   6.8  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    27   6.8  

>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
           protein F30H5.3 protein.
          Length = 1599

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 354 SPVQKLSTKRISLQCTDLGTLNLICPPVKHIC 449
           S  Q  S+   + +CT +G++ L CP V  +C
Sbjct: 415 SNCQTASSCTSNFECTSIGSMQLCCPTVASVC 446


>AF039720-3|AAB96697.1|  281|Caenorhabditis elegans Collagen protein
           54 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 330 APDKADSRELGHPYFPGSDGPDASTG--GRRVPHVD 229
           AP K  +R  G P  PG +GP    G  G++ PH D
Sbjct: 190 APGKNGNRGSGAPGAPGPEGPIGEPGKDGQQGPHGD 225


>Z68507-1|CAA92826.1|  337|Caenorhabditis elegans Hypothetical
           protein M18.1 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 300 GHPYFPGSDGPDASTGGRRVPHVDSLRAGCRSTS 199
           GHP  PG+ GP  + G    P  D+    C S S
Sbjct: 248 GHPGQPGNAGPPGTPGAAGQPGGDAAYCPCPSRS 281


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
           protein K04H4.1b protein.
          Length = 1502

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 306 ELGHPYFPGSDGPDASTG 253
           E GHP  PG DGP+ + G
Sbjct: 56  EPGHPGAPGQDGPEGAPG 73


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
           protein K04H4.1a protein.
          Length = 1759

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 306 ELGHPYFPGSDGPDASTG 253
           E GHP  PG DGP+ + G
Sbjct: 56  EPGHPGAPGQDGPEGAPG 73


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
           collagen protein.
          Length = 1758

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 306 ELGHPYFPGSDGPDASTG 253
           E GHP  PG DGP+ + G
Sbjct: 56  EPGHPGAPGQDGPEGAPG 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,823,684
Number of Sequences: 27780
Number of extensions: 211358
Number of successful extensions: 786
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)