Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k05f
         (603 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113517-1|AAM29522.1|  738|Drosophila melanogaster RE59932p pro...    29   3.7  
AE014298-1309|AAF46469.1|  738|Drosophila melanogaster CG12121-P...    29   3.7  

>AY113517-1|AAM29522.1|  738|Drosophila melanogaster RE59932p
           protein.
          Length = 738

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +1

Query: 349 SVCERAAKSIFFYRTNLGTLKCIFWTFTCKYTKFLFFCLHKKFVLPIFLINNSRIYYEAS 528
           S  E    +++F  + L  L  +FW F  K +K   + +H    + +FL + S +++  +
Sbjct: 422 SAGEMPLPALYFMMSLLFFLSGLFWVFILKKSKHTVYKIHYLMAVLVFLKSLSLMFHSIN 481

Query: 529 LSF 537
             F
Sbjct: 482 YHF 484


>AE014298-1309|AAF46469.1|  738|Drosophila melanogaster CG12121-PA
           protein.
          Length = 738

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +1

Query: 349 SVCERAAKSIFFYRTNLGTLKCIFWTFTCKYTKFLFFCLHKKFVLPIFLINNSRIYYEAS 528
           S  E    +++F  + L  L  +FW F  K +K   + +H    + +FL + S +++  +
Sbjct: 422 SAGEMPLPALYFMMSLLFFLSGLFWVFILKKSKHTVYKIHYLMAVLVFLKSLSLMFHSIN 481

Query: 529 LSF 537
             F
Sbjct: 482 YHF 484


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,943,788
Number of Sequences: 53049
Number of extensions: 460821
Number of successful extensions: 1423
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2462276481
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)