Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k04r
(758 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 4e-22
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 43 3e-04
SB_50040| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_48944| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0) 28 9.5
SB_31395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_56595| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 102 bits (244), Expect = 4e-22
Identities = 67/192 (34%), Positives = 97/192 (50%), Gaps = 3/192 (1%)
Frame = -3
Query: 729 SAADIKRAVDKFLTYKPVDQTANWVVGNHDNSRMATRYGASLVDGINMLVLLLPGVAVTY 550
+A +I V K+L P + NW++GNHD R+ TR G + + + +L L LPG AV Y
Sbjct: 320 TALEISEKVVKYLNDVPKGKWPNWLLGNHDCKRVGTRMGQANLPAMTVLYLTLPGTAVMY 379
Query: 549 MGEEIGLEDGYVSWEDTVDPSGCNTNDPIKYVESSRDPERTPFHWNPEKNAGFSTADKTW 370
G+EIGL D +S + + SRDP R W +N GFS A K W
Sbjct: 380 YGDEIGLMDADISKGE---------------INDSRDPCRGIMQWENAENYGFSQAKKLW 424
Query: 369 LPMAEGYETLNVEVQKASERSHLKVYKALSDLRQ-ENTFRYGRYESLALNQDIFVFKR-- 199
LP + +T NVEVQK E S L + + + LR E F + + ++ I + R
Sbjct: 425 LPGTDNNKT-NVEVQKLDETSMLVLTRKILKLRNAEKAFHGLNFRLIHVDSSILAYTRST 483
Query: 198 WLNDVIYLVVVN 163
WL+ Y+V++N
Sbjct: 484 WLSK--YVVIIN 493
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = -3
Query: 336 VEVQKASERSHLKVYKALSDLRQENTFRYGRYESLALNQDIFVFKRWLNDVIYLVVVNMR 157
V+ Q+ +SH VYKA S LR+ + F+ + + + ++ ++ + L YLVV+N
Sbjct: 987 VKEQEKGNKSHYSVYKAASALRRNDAFKKVKTQDIHVDSQVYAY---LRADKYLVVINFS 1043
Query: 156 DVEHNIDL 133
D E N DL
Sbjct: 1044 DKEWNGDL 1051
Score = 36.7 bits (81), Expect = 0.020
Identities = 21/84 (25%), Positives = 41/84 (48%)
Frame = -3
Query: 756 LITDVDASSSAADIKRAVDKFLTYKPVDQTANWVVGNHDNSRMATRYGASLVDGINMLVL 577
L +D + I + V +L P + + +G+ ++ +VD +N+L+L
Sbjct: 909 LANKIDLADLPGSINKTVMAYLAMVPAGKWPTFTLGD-------SKIDDKMVDAMNVLLL 961
Query: 576 LLPGVAVTYMGEEIGLEDGYVSWE 505
LPG ++ G+E+GLE + W+
Sbjct: 962 TLPGTPLSTSGQELGLES--MKWD 983
>SB_50040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -3
Query: 567 GVAVTYMGEE---IGLEDGYVSWEDTVDPSGCNTN 472
G Y GE +GL+ G+V W+D + +G N N
Sbjct: 109 GQYCVYQGEAGCPVGLDSGWVVWDDERNDNGTNRN 143
>SB_48944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3
Query: 474 NDPIKYVESSRDPERT 427
NDP KY SSRDP+R+
Sbjct: 73 NDPQKYPNSSRDPKRS 88
>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 537
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = -3
Query: 426 PFHWNPEKNAGFSTADKTWLPMAEGYETLNVEVQKASERSH---LKVYKALSDLRQENT 259
P HW N S + ++ AE YE + E KA +H L VY+ L NT
Sbjct: 41 PEHWEVLINEAKSFYEDEFVSTAEDYEAMAHEESKAKSLAHNDLLPVYRKELRLSPHNT 99
>SB_31395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3
Query: 474 NDPIKYVESSRDPERT 427
NDP KY SSRDP+R+
Sbjct: 73 NDPQKYPNSSRDPKRS 88
>SB_56595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 358 GHRQPGLVSGRESSVFLGVPMERSPFGISRRFD 456
G R+P + G E +FLG+P R+P G R D
Sbjct: 21 GMREP-VPGGYEVEIFLGIPYARAPVGELRFAD 52
>SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -3
Query: 639 NSRMATRYGASLVDGINMLVLLLPG----VAVTYMGEEIGLEDGYVSWED 502
NS A RY A N+L L+L G VA++Y+ +E+ +E GY W +
Sbjct: 190 NSMSAIRYLA------NILPLILVGFGFLVALSYVYKELSVEGGYSEWSN 233
>SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Frame = -3
Query: 384 ADKTWLPMAEGYETLNVEVQKASERSHLKVYKALSDLRQENTFRYGRYESLALNQDIFVF 205
+D T + G + +E + L+ + R EN+ R+G+Y L N+ +
Sbjct: 203 SDMTGMREESGNDVSLIEQRILDSNPVLEAFGNACTTRNENSSRFGKYIQLQFNRQFQIV 262
Query: 204 KRWLNDVIY--LVVVNMRDVEHNIDLTYFENVSGNVAVSIRSVN 79
L + VV+ + E N + Y +S +A + RS +
Sbjct: 263 GAKLKTYLLEKTRVVHQAEGERNFHIFY--QMSAGMAYASRSTS 304
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,981,508
Number of Sequences: 59808
Number of extensions: 510980
Number of successful extensions: 1259
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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