Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k04r
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g52490.1 68418.m06512 fibrillarin, putative similar to fibril... 29 3.4
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ... 29 3.4
At1g20610.1 68414.m02575 cyclin, putative similar to G2/mitotic-... 29 4.4
At1g02080.1 68414.m00130 transcriptional regulator-related conta... 28 5.9
At2g07770.1 68415.m01005 hypothetical protein low similarity to ... 28 7.7
At2g05250.1 68415.m00553 DNAJ heat shock N-terminal domain-conta... 28 7.7
At2g05230.1 68415.m00551 DNAJ heat shock N-terminal domain-conta... 28 7.7
At1g53520.1 68414.m06070 chalcone-flavanone isomerase-related lo... 28 7.7
>At5g52490.1 68418.m06512 fibrillarin, putative similar to
fibrillarin from {Xenopus laevis} SP|P22232, {Mus
musculus} SP|P35550, {Homo sapiens} SP|P22087
Length = 292
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -3
Query: 669 TANWVVGNHDNSRMATRYGASLVDGINMLVLLLPGVAVTYMGEEIGLEDGYVSWEDTVDP 490
T + V N S++A ++ G++ + + PGV V Y+G G +VS D V P
Sbjct: 105 TVEYRVWNPHRSKLAD----AITTGVDN-IWIKPGVKVLYLGASSGYTVSHVS--DIVGP 157
Query: 489 SGC 481
GC
Sbjct: 158 EGC 160
>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
identical to ubiquitin-specific protease 21 GI:11993482
[Arabidopsis thaliana]
Length = 732
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/78 (23%), Positives = 30/78 (38%)
Frame = -3
Query: 468 PIKYVESSRDPERTPFHWNPEKNAGFSTADKTWLPMAEGYETLNVEVQKASERSHLKVYK 289
P K SS P ++NPE+N + + + P + ++ S +HL++
Sbjct: 56 PAKPDGSSSSPPDKTLNFNPEENRDVNPDESSSSPSDKTLIAPPAQISPVSNNNHLRITN 115
Query: 288 ALSDLRQENTFRYGRYES 235
RY YES
Sbjct: 116 TSDSYLYRPPRRYIEYES 133
>At1g20610.1 68414.m02575 cyclin, putative similar to
G2/mitotic-specific cyclins (B-like cyclin) from
{Medicago varia} SP|P46278, SP|P46277; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 429
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -3
Query: 558 VTYMGEEIGLEDGYVSWEDTVDPSGCNTNDPIKYVESSRDPERTPFHWNPEK 403
+ M +EI +ED E +D C+ N+P+ VE D F+ N EK
Sbjct: 141 IEQMEKEIEMEDADKEEEPVIDIDACDKNNPLAAVEYIHDMH--TFYKNFEK 190
>At1g02080.1 68414.m00130 transcriptional regulator-related contains
Pfam PF04054: CCR4-Not complex component, Not1; contains
TIGRFAM TIGR01612: reticulocyte binding protein; similar
to General negative regulator of transcription subunit 1
(SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
gb|T44328 and gb|AA395265
Length = 2378
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = -3
Query: 756 LITDVDASSSAADIKRAVDKFLTYKPVDQT------ANWVVGNHDNSRMATRYGASLVDG 595
++++VDA+ A +K VD++LT + + T ++ + + S TRY L++
Sbjct: 2160 ILSEVDAALKAKQMKNDVDEYLTSRQQNSTFLSELKTKLLLSSSEASSAGTRYSVPLINS 2219
Query: 594 I 592
+
Sbjct: 2220 L 2220
>At2g07770.1 68415.m01005 hypothetical protein low similarity to KED
[Nicotiana tabacum] GI:8096269; contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 518
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -3
Query: 348 ETLNVEVQKASERSHLKVYKALSDLRQENTFRYGRYESLALNQDIFVFKRWLNDVI 181
+T+N EV AS + +A++DL TF +GR+ +DIF + N+V+
Sbjct: 19 QTINDEVVVASAAEKFFL-RAVADLELCKTFPWGRFAFEENVKDIFYLIKKCNEVV 73
>At2g05250.1 68415.m00553 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 706
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 456 VESSRDPERTPFHWNPEKNAGFSTADKTWLPMAEGY 349
VE+ P PFH+ P +A S A + P + GY
Sbjct: 206 VETGPAPVSAPFHYTPPSHAPPSHAPPSHAPPSNGY 241
>At2g05230.1 68415.m00551 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 706
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 456 VESSRDPERTPFHWNPEKNAGFSTADKTWLPMAEGY 349
VE+ P PFH+ P +A S A + P + GY
Sbjct: 206 VETGPAPVSAPFHYTPPSHAPPSHAPPSHAPPSNGY 241
>At1g53520.1 68414.m06070 chalcone-flavanone isomerase-related low
similarity to GI:499036 (Vitis vinifera)
Length = 287
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = -3
Query: 264 NTFRYGRYESLALNQDIFVFKRWLNDVIYLVVVNMRDVEHNIDLTYFENVSGNVAVSIRS 85
+TFR G +++ LN+ + W+N LV V+ + N+D T SGNV ++
Sbjct: 207 STFR-GIFQNRPLNKGSVILLTWINTSNMLVSVSSGGLPTNVDATI---ESGNVTSALFD 262
Query: 84 V 82
V
Sbjct: 263 V 263
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,879,937
Number of Sequences: 28952
Number of extensions: 365998
Number of successful extensions: 950
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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