Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k03r
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    29   0.51 
SPBC21C3.16c |spt4||transcription elongation factor complex subu...    29   0.68 
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    27   2.7  
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    27   3.6  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   3.6  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    25   8.3  

>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = +2

Query: 470 PVPL-RASSYKCALIQVKNAVTLVYTDGFPASH--PSLGPNEITPIKILELFQTTVKGPP 640
           P+P  R  +Y+C L   +N+   + ++GF   H   + G +E   ++    FQ  +K   
Sbjct: 393 PIPRSRQLAYQCLLHIAQNSPIQIASEGFAIRHLLEAEGDHETCLLR----FQ-VLKTMM 447

Query: 641 ESPSQGPRLPAPLVQDD 691
           ESP  GP+LP    ++D
Sbjct: 448 ESPHGGPKLPFGRYRED 464


>SPBC21C3.16c |spt4||transcription elongation factor complex subunit
           Spt4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 105

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 95  LICGIILYHQYFSNKYC 145
           LICGI+L H  F+NK C
Sbjct: 13  LICGIVLPHSVFANKGC 29


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = +2

Query: 446 VYNKTLLFPVPLRASSYKCALIQVKNAVTLVYTDGFPASHPSLGPNEITPIKILELFQTT 625
           V N ++    P  +SS      +  +  ++++T      HPS+   +ITP   LE     
Sbjct: 240 VENSSITKSSPRSSSSSNNERFKDTSEESIIFTSPNTPEHPSVYQTDITPEIKLEHSDNN 299

Query: 626 VKGPPESPSQGP 661
               PE P + P
Sbjct: 300 SPSKPEIPFRHP 311


>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 678 SGAGNRGPCDGDSGGPLTVVWNNSRILIG 592
           +G   RGP  G+S G L +V+N    LIG
Sbjct: 125 NGVTRRGPFVGNSLGVLALVYNGINSLIG 153


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 542 TDGFPASHPSLGPNEITPIKILELFQTTVKGPPESP 649
           TD F    PS  PN +TP+K ++  Q   + P ESP
Sbjct: 184 TDPFSPVSPS-NPNFLTPLKPIDGNQEWQQSPLESP 218


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 602 ILELFQTTVKGPPESPSQGPRLPAPLVQDDYPGS*W 709
           +L  +   V   PE+   G RLP   V  +YP   W
Sbjct: 172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGW 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,149
Number of Sequences: 5004
Number of extensions: 50542
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)