Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k03r
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373...    31   1.2  
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353...    29   5.0  
02_02_0218 - 7975237-7975934,7976896-7977721                           28   6.6  
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779...    28   8.7  

>01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343,
            32237909-32239263,32240399-32240460,32240544-32241144,
            32241229-32241310,32241778-32241840
          Length = 1111

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
 Frame = +2

Query: 446  VYNKTLLFPVPLRASSYK-CALIQVKNAVTLVYTDGF--PASHPSLGPNEITPIKILELF 616
            V++KTL   VP+ A S    +  +++N     Y  GF  P   P  GP+   P       
Sbjct: 818  VHDKTLSPSVPMLAPSVSDSSHHEIRNPRVSGYNAGFTVPTERPIYGPS--AP----RAP 871

Query: 617  QTTVKGPPESPSQGPRLPAPLVQDDY-------PGS*W 709
            Q  +  PP S  +GP +P P +Q  +       PGS W
Sbjct: 872  QGILPCPPVSAHRGPVIPPPPIQTSFVRPVYPGPGSPW 909


>02_05_0568 -
           30034280-30034393,30034888-30035163,30035246-30035371,
           30035595-30035753,30035893-30036063,30036374-30036493,
           30036565-30036924,30038800-30039686,30039790-30040363,
           30041379-30041507,30042423-30042494,30042572-30042728,
           30042974-30043023,30043569-30044327
          Length = 1317

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
 Frame = +2

Query: 554 PASHPSLGPNEITPIKILELFQTTVKGP------PESPSQGPRLPAPLVQDDYP 697
           P  +P+  PN  TP ++  LF+     P      P  P+ GP  P P     YP
Sbjct: 4   PTGNPNPNPNPSTPFEVSMLFKPPSNAPAAAPIFPGGPAAGP--PPPSAAYSYP 55


>02_02_0218 - 7975237-7975934,7976896-7977721
          Length = 507

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 497 KCALIQVKNAVTLVYTDGFPASHPSLGPNEITP 595
           + A ++  NA +LV  D  PAS P+  P  +TP
Sbjct: 235 RSAFLRAGNATSLVIEDNPPASAPAPAPATMTP 267


>11_06_0578 +
           25176304-25176388,25176503-25177032,25177267-25177997,
           25178122-25178172,25178562-25178813,25178894-25179004,
           25179102-25179183,25179460-25179489
          Length = 623

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +2

Query: 635 PPESPSQGPRLPAP 676
           PP SPSQ P LPAP
Sbjct: 394 PPPSPSQQPTLPAP 407


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,081,626
Number of Sequences: 37544
Number of extensions: 305643
Number of successful extensions: 696
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)