Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k03r
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    46   3e-05
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    44   1e-04
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    44   1e-04
U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical pr...    32   0.48 
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    32   0.48 
Z92833-1|CAE17827.1|  160|Caenorhabditis elegans Hypothetical pr...    31   0.84 
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    28   5.9  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    28   5.9  
U80440-2|AAK21469.1|  162|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF078157-11|AAG24070.1|  401|Caenorhabditis elegans Hypothetical...    28   5.9  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = -2

Query: 669 GNRGPCDGDSGGPLTVVWNNSR-ILIGVISFGPNEGCEAGK-PSVYTRVTAFLTWINA 502
           G    C GDSGGP      +   +L GVIS+G  +GC   K P +YT V  +L+WI+A
Sbjct: 203 GGIDSCQGDSGGPFACRREDGAFVLAGVISWG--DGCAQKKQPGIYTMVAPYLSWISA 258


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
 Frame = -2

Query: 678 SGAGNRGPCDGDSGGPLTVVWNNSR-ILIGVISFGPN--EG-CEAGK-PSVYTRVTAFLT 514
           +GA   G   GDSGGPL +  +N   + IG+ S+G +  +G  + GK P VYTR++ ++ 
Sbjct: 217 AGAYLHGTAPGDSGGPLLIHKSNGEYVQIGITSYGADGLDGVIDQGKFPGVYTRISKYVP 276

Query: 513 WI 508
           WI
Sbjct: 277 WI 278


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -2

Query: 669 GNRGPCDGDSGGPLTVVWNNSRILIGVISFGPNEGC-EAGKPSVYTRVTAFLTWINAHL 496
           G    C GDSGGPL    +    L GV+S+G   GC   G P VY  V +  TWIN  +
Sbjct: 232 GKIDSCQGDSGGPLMCARDGHWELTGVVSWG--IGCARPGMPGVYGNVHSASTWINLEM 288


>U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical
           protein B0286.6 protein.
          Length = 279

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = -2

Query: 684 CTSGAGNRG-PCDGDSGGPL--TVVWNNSRILIGVISFG 577
           CTS A NRG  CDGDSG  +  T    N ++L+GV+S G
Sbjct: 197 CTS-AVNRGLSCDGDSGSGVVRTSDTRNVQVLVGVLSAG 234


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -2

Query: 690 SSCTSGAGNRGPCDGDSGGPLTVVWNNS--RILIGVISFG 577
           S CT+   ++  C GDSGG LT   ++S    +I ++S+G
Sbjct: 258 SFCTAEEEDKNVCSGDSGGGLTFHQSDSAREFIIAIVSYG 297


>Z92833-1|CAE17827.1|  160|Caenorhabditis elegans Hypothetical
           protein F38A6.4 protein.
          Length = 160

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +2

Query: 491 SYKCALIQVKNAVTLVYTDGFPASHPSLGPNEITPIK---ILELFQTTVK--GPPESPSQ 655
           S++C LI V   V++  +       PSL  NEI  +K   + E+F  T+    PP+ P  
Sbjct: 8   SFRCLLIFVSGLVSVAISQSITEKTPSL--NEIKNLKNTELDEIFGATMSKTPPPDLPDM 65

Query: 656 GP 661
           GP
Sbjct: 66  GP 67


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 669 GNRGPCDGDSGGPLTVVWNNSRILIGVIS 583
           G+   C GDSG P+    N  RIL+G ++
Sbjct: 205 GSSRACMGDSGSPVYCFVNGKRILVGTVA 233


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
           protein K04H4.1a protein.
          Length = 1759

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
 Frame = +2

Query: 545 DGFPASHPSLGPNEI-TPIKILELF--QTTVKGPPESPSQG-----PRLPAPLVQDDYPG 700
           DG P    + GP  I  P++I+     Q  V G P  P        P LP P+  D YPG
Sbjct: 705 DGLPGLPGAQGPRGIPAPLRIVNQVAGQPGVDGMPGLPGDRGADGLPGLPGPVGPDGYPG 764

Query: 701 S 703
           +
Sbjct: 765 T 765


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
           collagen protein.
          Length = 1758

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
 Frame = +2

Query: 545 DGFPASHPSLGPNEI-TPIKILELF--QTTVKGPPESPSQG-----PRLPAPLVQDDYPG 700
           DG P    + GP  I  P++I+     Q  V G P  P        P LP P+  D YPG
Sbjct: 704 DGLPGLPGAQGPRGIPAPLRIVNQVAGQPGVDGMPGLPGDRGADGLPGLPGPVGPDGYPG 763

Query: 701 S 703
           +
Sbjct: 764 T 764


>U80440-2|AAK21469.1|  162|Caenorhabditis elegans Hypothetical
           protein T21E12.3 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 696 G*SSCTSGAG-NRGPCDGDSGGPLTVVWNNSRILIGVISFGPNEGCEA 556
           G + CT     N+  C GDSGG +  + N+   ++GVI  G    CEA
Sbjct: 58  GKAFCTKSISKNQLACTGDSGGGVVQLINDRVTVVGVIYEGVT--CEA 103


>AF078157-11|AAG24070.1|  401|Caenorhabditis elegans Hypothetical
           protein F25E5.10 protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 654 CDGDSGGPLTVVWNNSRILIGVISFGPNEGCEAGKPSVYT 535
           C+GD GG     ++ S    GV   GP E  +A + +VYT
Sbjct: 247 CNGDFGGAAVSKFHGSVRAYGVYVDGPYECNKANRRTVYT 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,770,604
Number of Sequences: 27780
Number of extensions: 293159
Number of successful extensions: 716
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)