Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k03r
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.0  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 714 FPHHDPG*SSCTSGAGNRG 658
           FP H+ G +SC     NRG
Sbjct: 63  FPVHEKGGASCGPNVYNRG 81


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 617 QTTVKGPPESPSQGP 661
           Q   +G P +PSQGP
Sbjct: 32  QAPQRGSPPNPSQGP 46


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 587 ITPIKILELFQTTVKGPPESPSQGP 661
           +T  K+LEL    +  PP SP   P
Sbjct: 254 VTRQKLLELGWDVLPHPPYSPDLAP 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,532
Number of Sequences: 438
Number of extensions: 4067
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)