Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k03r
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25050.1 68415.m02996 formin homology 2 domain-containing pro...    31   0.78 
At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR...    29   2.4  
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain...    28   5.5  
At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein ...    28   7.2  
At3g20980.1 68416.m02653 hypothetical protein                          27   9.6  
At1g31910.1 68414.m03921 GHMP kinase family protein contains TIG...    27   9.6  

>At2g25050.1 68415.m02996 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 1111

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 476 PLRASSYKCALIQVKNAVTLVYTDGFPASHPSLGPNEITPIKILELFQTTVKGPPESPSQ 655
           PL +S  K A  Q   + T V+++G P++  ++  + + P+K L +       PP  P  
Sbjct: 522 PLTSSQPKKASPQCPQSPTPVHSNGPPSAEAAVTSSPLPPLKPLRILSRPPPPPPPPPIS 581

Query: 656 GPR-LPAP 676
             R  P+P
Sbjct: 582 SLRSTPSP 589


>At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1036

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 578 PNEITPIKILELFQTTVKGPPESPSQGPRL 667
           P   T IK+L+L +TT+K  P S    PRL
Sbjct: 767 PEISTNIKVLKLLRTTIKEVPSSIKSWPRL 796


>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to  NtN2 [Medicago truncatula] GI:3776084; contains Pfam
           profile PF00917: MATH domain
          Length = 420

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 672 AGNRGPCDGDSGGPLTVVWNNSRILIGVISFGPNEGCEAG 553
           +G RGP  G  GGP    W+  R        GP  GC +G
Sbjct: 73  SGPRGPRPGGGGGPGPGPWSGPRGPRPGGGGGPGSGCGSG 112


>At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 437

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 626 VKGPPESPSQGPRLPAPLVQDDYP 697
           V+GPP+ P Q    P P +Q  YP
Sbjct: 154 VQGPPQQPQQQQPQPQPQLQTIYP 177


>At3g20980.1 68416.m02653 hypothetical protein
          Length = 405

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 566 PSLGPNEITPIKILELFQTTVKGPPESPSQGPRLPAPLVQDD 691
           P +  N ++ ++ +E+ +T   G P  PS+ P+L A +  +D
Sbjct: 165 PGITGNALSVVQ-MEMKRTLANGIPPDPSKNPKLAATIQAED 205


>At1g31910.1 68414.m03921 GHMP kinase family protein contains
           TIGRFAM profile TIGR01219: phosphomevalonate kinase;
           contains Pfam PF00288: GHMP kinases putative ATP-binding
           protein domain; similar to Phosphomevalonate kinase (EC
           2.7.4.2) (Swiss-Prot:P24521) [Saccharomyces cerevisiae]
          Length = 505

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 648 GDSGGPLTVVWNNSRILIGVISFGPNEGC-EAGKP 547
           GDSG  LT  W++  +L  ++   P+  C E+G P
Sbjct: 456 GDSGTKLTQAWSSHNVLALLVREDPHGVCLESGDP 490


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,540,847
Number of Sequences: 28952
Number of extensions: 255547
Number of successful extensions: 551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)