Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k03f
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 32 0.080
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 31 0.19
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 27 1.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.3
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 27 3.0
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 26 4.0
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 5.3
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 5.3
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 26 5.3
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 5.3
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 25 7.0
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 7.0
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 25 9.2
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 31.9 bits (69), Expect = 0.080
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 211 TSCRTSGALNDRLDVNLRWLSCLQHEDHHCSSLLVGRPESSEAVHSSTRLHDYI 372
+SC +SG+ + R+ +L+ C H SLL+ E S A HSS +H+Y+
Sbjct: 178 SSCESSGSPSSRVVGSLQGSYCPSGTHLHEGSLLL---EDSSARHSSDSVHEYL 228
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 30.7 bits (66), Expect = 0.19
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Frame = +2
Query: 344 TAVLGSTTIFTGGIRIDTSAVTVHPNWNTNDYTHDIAVIRITSVAYSNNVQAIPLPSASD 523
T V +TT+ ++T+ V V P + N T V+ T+ ++N +P + S
Sbjct: 113 THVNSTTTVVPPTTHVNTTTV-VPPTTHVNTTT----VVPPTT--HANTTSFVPTTTESS 165
Query: 524 VNRDFVGLTGTI--SGYGKTSGAQTSIPLTSVLYQTSVPVI 640
++ G T +GY TS ++ ++ ++ TSVP++
Sbjct: 166 IHPITTGFYNTTFTTGYFNTSVTSVAVHNSTTVFPTSVPIV 206
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 407 TVHPNWNTNDYTHDIAVIRITSVAYSNNVQAIPLPSASDVNRDFVGLTGTISGYGKTSGA 586
TVH T+DY+ + R+ + + N S V+ F+G GT+ YG+T
Sbjct: 33 TVHIE--TSDYSGNFVFDRVFHPSSTQN-DIFSYSIESTVDDLFLGYNGTVLAYGQTGSG 89
Query: 587 QT 592
+T
Sbjct: 90 KT 91
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.3
Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 2/129 (1%)
Frame = +2
Query: 254 SICGGSLVSNTRIITAAHCWWDGQSQAKQFTAVLGSTTIFTGGIRIDTSAVTVHPNWNTN 433
S+ S VS+T + ++A+ + + T+V +T S +T + +T
Sbjct: 527 SVLPTSSVSSTPL-SSANSTTATSASSTPLTSVNSTTATSASSTPFGNSTITSSASGSTG 585
Query: 434 DYTHDIAVIRITSVAYSNNVQAIPLPSASDVNRDFVGLTGTI--SGYGKTSGAQTSIPLT 607
++T+ T+ + ++ P+++ ++ V T T SG+ TSG TS T
Sbjct: 586 EFTN-------TNSGNGDVSGSVTTPTSTPLSNSTVAPTSTFTSSGFNTTSGLPTSSAST 638
Query: 608 SVLYQTSVP 634
+ T P
Sbjct: 639 PLSNSTVAP 647
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 26.6 bits (56), Expect = 3.0
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Frame = +2
Query: 344 TAVLGS-TTIFTGGIRIDTSAVTVHPNWNTNDYTHDIAVIRITSVAYSNNVQAIPLPSAS 520
T V G+ TT+ TG +TS VTV P T T I + ++ V + +
Sbjct: 792 TIVTGTVTTVTTGYTGTETSTVTVIPTGTTGTTTVVIQTPTTVTATETDIVTVTTGYTGT 851
Query: 521 DVNRDFVGLTGTISGYGKTSGAQTSIPLTSVLYQTSVPVI 640
+ + V TGT +G T+ P T +T + +
Sbjct: 852 ETSTVTVTPTGTSTG---TTTVVIQTPTTVTATETDIVTV 888
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 394 VNPDPPSEYSRGAEY 350
V+P+PPS+YS G Y
Sbjct: 143 VSPEPPSDYSFGVHY 157
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 485 NNVQAIPLPSASDVNRDFVGLTGTISGYGKTSGAQTSIPLTSVLYQTSVPVI 640
++V P DVN G ++S AQT+IP S TS PV+
Sbjct: 519 SHVNETPYRGLHDVNLPASGNASSVSAIPPQVSAQTTIPAAST-SATSGPVV 569
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 295 HCSSLLVGRPESSEAVHSSTRLHDYIHWGDQ 387
+ S L+ E S++ +++ HD+I+WG Q
Sbjct: 901 YLKSFLLWIQEPSKSHYNANIFHDFINWGAQ 931
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.8 bits (54), Expect = 5.3
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 183 LPPIILLDSKRFNSYAL-GTPNLK**PYAGPLKAYPFANITAHVSMNKTE*RIL-SKFTE 10
LPP +L +KRFN + L G N K + + A I +S K + I+ SKF E
Sbjct: 1152 LPPFLLSQAKRFNKFLLEGFQNHKNHLFEETSNSGTLACILDLLSQGKLQISIVGSKFNE 1211
Query: 9 IEL 1
L
Sbjct: 1212 YGL 1214
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 331 LTLAVPPAVSCSDDPRVGDKRA 266
+TL +PP +S +D ++G+K A
Sbjct: 1042 VTLVLPPKISTKEDTKLGEKCA 1063
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Frame = +1
Query: 202 CDTTSCRTSGALNDRLDVNLRW----LSC--LQHEDHHCSSLLVGRPESSEAVHSST 354
C C T GA++D + V W ++C L H CS P H+ T
Sbjct: 102 CPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDT 158
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 259 LRWLSCLQHEDHHCSSLLVGRPESSEAVHS 348
L W+S L H +C L VG+ + + HS
Sbjct: 1598 LEWISKLDHLMDNCIRLNVGQRQQGSSSHS 1627
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +1
Query: 157 GVQ*DYWRKPSCSGICDTTSCRTSGALNDR 246
G+ D+W+ S +C SC L DR
Sbjct: 145 GISKDHWKPDSDVSVCSFPSCSVRFGLFDR 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,137
Number of Sequences: 5004
Number of extensions: 63562
Number of successful extensions: 169
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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