Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k03f
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0990 - 7682291-7683025,7683256-7683510,7684120-7684320,768... 31 0.77
02_01_0390 - 2824585-2825307,2828206-2828460,2829006-2829107,282... 30 1.3
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656... 29 2.4
01_01_0839 - 6540971-6541978,6542076-6542240,6542330-6542419,654... 29 4.1
01_01_0148 - 1337494-1338057 29 4.1
07_03_1520 + 27415266-27415507,27415608-27415722,27415761-274158... 28 5.4
11_06_0537 + 24757670-24757745,24757925-24757979,24758433-24758481 28 7.2
05_02_0137 + 6996336-6996415,6998240-6998351,6999292-6999453,699... 28 7.2
04_03_0767 + 19389337-19389381,19390586-19390643,19390720-193907... 28 7.2
06_01_0594 - 4281951-4282052,4282324-4282364,4282983-4283058 27 9.5
>06_01_0990 -
7682291-7683025,7683256-7683510,7684120-7684320,
7684809-7685021,7685152-7685364
Length = 538
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 107 GYHLRFGVPKAYELKRLESSRIIGGSQVAAASVIPH 214
G H++FG+P A+ + L S + G+ VAAA + H
Sbjct: 82 GDHVKFGLPMAFTVTMLSWSLLEYGADVAAAGELAH 117
>02_01_0390 -
2824585-2825307,2828206-2828460,2829006-2829107,
2829386-2829598,2829688-2829897
Length = 500
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 107 GYHLRFGVPKAYELKRLESSRIIGGSQVAAASVIPH 214
G H++FG+P A+ + L S + G ++AAA + H
Sbjct: 81 GDHVKFGLPMAFTVTMLSWSVLEYGEEIAAAGELGH 116
>01_01_0841 -
6564029-6564348,6564654-6564686,6564793-6565450,
6565530-6565694,6565789-6565878,6565982-6566182,
6566525-6566737,6566835-6567077
Length = 640
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 74 ANGYAFNGPAY--GYHLRFGVPKAYELKRLESSRIIGGSQVAAASVIPHHV 220
ANG G Y G +++FG+P A+ + + S I G ++AAA + H V
Sbjct: 79 ANGVDLVGGYYDAGDNVKFGLPMAFTVTMMAWSVIEYGEEMAAAGELGHAV 129
>01_01_0839 -
6540971-6541978,6542076-6542240,6542330-6542419,
6542536-6542736,6542886-6543098,6543216-6543461
Length = 640
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 74 ANGYAFNGPAY--GYHLRFGVPKAYELKRLESSRIIGGSQVAAASVIPHHVGLV 229
ANG G Y G +++FG P A+ + + S + G Q+AAA + H + V
Sbjct: 80 ANGVDLVGGYYDAGDNVKFGFPMAFTVTMMAWSVLEYGKQMAAAGELGHAMDAV 133
>01_01_0148 - 1337494-1338057
Length = 187
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 397 GVNPDPPSEYSRGAEYCCELLRLTLAVPPAVSCSDD 290
G + P SE+ G CC++ T ++PP CSD+
Sbjct: 111 GTSCAPSSEWPWGP--CCDIAVCTKSLPPICHCSDE 144
>07_03_1520 +
27415266-27415507,27415608-27415722,27415761-27415815,
27415862-27417849,27418161-27418589
Length = 942
Score = 28.3 bits (60), Expect = 5.4
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Frame = +2
Query: 41 VLFILTCAVIFANGYAFNGPAY-GYHLRFGVPKAYELKRLESSRIIGG-SQVAAASVIPH 214
+LF+ CAVI GY F+ AY + F + A L+ + +I ++V A + P
Sbjct: 232 ILFLCMCAVIAILGYLFSDSAYIVAPMAFFLIFALVLESFGNLQIPAAVARVVIAMIQPT 291
Query: 215 HVGLVALLTTGWMSICGGSLVSNTRIITAAHCWWDG 322
V V + T G + + T H + DG
Sbjct: 292 TVICVQSILTAVTQRTSGIYIGIPKNCTREHAYPDG 327
>11_06_0537 + 24757670-24757745,24757925-24757979,24758433-24758481
Length = 59
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 41 VLFILTCAVIFANGYAFNGPAYGYHL 118
++F+ A +F+ G A GPAY Y L
Sbjct: 13 LIFVAIAATLFSTGLAQGGPAYEYCL 38
>05_02_0137 +
6996336-6996415,6998240-6998351,6999292-6999453,
6999755-6999874,6999947-7000108
Length = 211
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 134 KAYELKRLESSRIIGGSQVAAASVIPHHVGLVALLTTGWMSICGGSLVSNTRIITAAHC 310
+A L RL R+I + V S IP+ + L + LT W ++ +I A C
Sbjct: 21 QAKVLDRLTFKRVIKKASVEEFSCIPYILALFSCLTYSWYGFPVKQVMLMASLILAVFC 79
>04_03_0767 +
19389337-19389381,19390586-19390643,19390720-19390759,
19390859-19390926,19391007-19391081,19391161-19391216,
19391317-19391361,19391450-19391701,19391787-19391881,
19392395-19392485,19392578-19392688,19392788-19392982,
19393071-19393262
Length = 440
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 167 YWTPNASTHMLWALRTSNDNRMQV 96
Y+ PNAS + LW+ ++DN QV
Sbjct: 51 YYLPNASPYQLWSRSFASDNGDQV 74
>06_01_0594 - 4281951-4282052,4282324-4282364,4282983-4283058
Length = 72
Score = 27.5 bits (58), Expect = 9.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 259 LRWLSCLQHEDHHC 300
L W+SC +H D+HC
Sbjct: 43 LTWISCKEHIDNHC 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,247,114
Number of Sequences: 37544
Number of extensions: 478820
Number of successful extensions: 1273
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -