Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k03f
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67780.1 68414.m07734 hypothetical protein                          29   2.6  
At1g05830.1 68414.m00610 trithorax protein, putative / PHD finge...    28   4.5  
At3g30280.1 68416.m03824 transferase family protein similar to d...    27   7.9  
At1g19940.1 68414.m02499 glycosyl hydrolase family 9 protein sim...    27   7.9  

>At1g67780.1 68414.m07734 hypothetical protein
          Length = 515

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 169 DYWRKPSCSGICDTTSCRTSGALN 240
           D W  P C GIC+ + CR    LN
Sbjct: 82  DDWICPQCRGICNCSFCRKKRGLN 105


>At1g05830.1 68414.m00610 trithorax protein, putative / PHD finger
           family protein / SET domain-containing protein similar
           to trithorax-like protein 1 [Arabidopsis thaliana]
           GI:12659210; contains Pfam domain, PF00628: PHD-finger
           and PF00856: SET domain
          Length = 1056

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 267 PPQIDIQPVVKSATSPT*CGITD--AAATWLPPIILLDSKR 151
           PP+  + PVV  A  PT  G     A A W+P   LLD K+
Sbjct: 647 PPRCCLCPVVGGAMKPTTDGRWAHLACAIWIPETCLLDVKK 687


>At3g30280.1 68416.m03824 transferase family protein similar to
           deacetylvindoline 4-O-acetyltransferase [Catharanthus
           roseus][GI:4091808][PMID:9681034], alcohol
           acyltransferase [Fragaria x
           ananassa][GI:10121328][PMID:10810141]
          Length = 443

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 181 SSNNPTGLQTLQLICFGHSEPQMITV 104
           SS  P  LQTLQL  + H  P + TV
Sbjct: 17  SSTTPNDLQTLQLSIYDHILPPVYTV 42


>At1g19940.1 68414.m02499 glycosyl hydrolase family 9 protein
           similar to endo-beta-1,4-D-glucanase GI:4165132 from
           [Lycopersicon esculentum]
          Length = 515

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 107 GYHLRFGVPKAYELKRLESSRIIGGSQVAAASVIPH 214
           G H++FG P A+    L  S +  G Q+A+ +++ H
Sbjct: 99  GDHMKFGFPMAFTATVLSWSILEYGDQMASLNLLDH 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,694,630
Number of Sequences: 28952
Number of extensions: 353710
Number of successful extensions: 842
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)