Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k02r
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   2.7  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    26   4.7  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    26   4.7  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    26   6.3  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   8.3  

>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 24.6 bits (51), Expect(2) = 2.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 714 LLQKIPIPALQVTSVTFGGPDLDQLYV 634
           LL  +P    QV ++ +  PDLDQ+YV
Sbjct: 460 LLSYLPSDGAQVETL-YSFPDLDQIYV 485



 Score = 20.6 bits (41), Expect(2) = 2.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 543 NVNVRLQ*CKKKNYKSNIDSHFL 475
           N +V  Q C + NY   IDS F+
Sbjct: 494 NWDVVDQKCSEGNYSDIIDSSFI 516


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 565 SVQSKGRAAGRELFFAAVHRGGGHVQLVQVRTPE 666
           S QSK      E F A +H+ GG+ QL+  R  E
Sbjct: 221 SEQSKKYNMFEEGFLAKLHKPGGNTQLIPERMKE 254


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 133 CQTGTFCFFHLLHSWVDELTANLV 204
           C +   C  + LH  V+ELTAN V
Sbjct: 223 CSSNAICGTYGLHKEVEELTANFV 246


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 223 IDIYNVNNATQLEI*ILRSQY 285
           +DI NV NATQL   I +S Y
Sbjct: 309 VDITNVQNATQLRKLIAKSMY 329


>SPCC550.03c |||RNA helicase involved in mRNA
            catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 605  SSPRFIEAEVTYNWSRSGPPN-VTDVT 682
            S PRF   EV Y W+R    N +TD+T
Sbjct: 1131 SQPRFGLMEVCYEWARGMSFNRITDLT 1157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,110
Number of Sequences: 5004
Number of extensions: 60359
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)