Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k02r
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0489 + 10869482-10871218                                         28   6.5  
01_05_0067 - 17799260-17799615,17799736-17800134,17800400-17800412     28   6.5  
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226...    28   8.6  

>02_02_0489 + 10869482-10871218
          Length = 578

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 654 DLDQLYVTSASMNRGEEQLPPCGSTFR 574
           +L  LY   AS   G E   PCGSTF+
Sbjct: 504 ELQSLYPNLASFVNGIEAQHPCGSTFK 530


>01_05_0067 - 17799260-17799615,17799736-17800134,17800400-17800412
          Length = 255

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = -3

Query: 681 VTSVTFGGPDLDQLYVTSASMNRGEEQLPPCGSTFRLDGLEVKGHPNVNVRLQ*CKKK 508
           VT++T+G   +   Y+TS  + R + +    G T + +GL VK   +V  +++  KKK
Sbjct: 34  VTTLTYGKDTIKTKYITSVLLARDQLRKNKEGETSQAEGLLVK-EDHVGRKVKKNKKK 90


>02_05_0902 +
           32620668-32621209,32621847-32622258,32622471-32622675,
           32622712-32622806,32622945-32623557,32623652-32623820,
           32624392-32624749,32625226-32625336,32626207-32626561,
           32627262-32627484,32627837-32628058,32628628-32628781
          Length = 1152

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 514 FTSLKTHVHIRMSFDLESVQSKGRAAGR--ELFFAAVHRGGGHVQL 645
           F +L   VH+    DL+ + SK RA GR     +A V R  G   L
Sbjct: 203 FHNLGVSVHMGHESDLDGLNSKARAGGRYYSAKYAVVERNKGFKHL 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,797,302
Number of Sequences: 37544
Number of extensions: 420554
Number of successful extensions: 883
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)