Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k02r
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006777-7|AAK72306.2|  367|Caenorhabditis elegans Seven tm rece...    33   0.27 
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical p...    28   7.8  

>AC006777-7|AAK72306.2|  367|Caenorhabditis elegans Seven tm
           receptor protein 222 protein.
          Length = 367

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +1

Query: 481 MTIDIRFVVFFFTSLKTHVHIRMSFDLESVQSKGRAAGRELFFAAV 618
           MT++I F+  FF  +K +  I+ +   +S  SK  A  R+LF+A V
Sbjct: 213 MTVNISFLAIFFFGIKCYFCIQ-NMVKQSASSKSNALQRQLFYALV 257


>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
           protein F26C11.3 protein.
          Length = 1317

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
 Frame = +2

Query: 545 GCPLTSSPSSLKVEPQGGSCS--SPRFIEAEVTYNWSRSG 658
           GC  TSS S +   P   + S  +P       TYNW   G
Sbjct: 828 GCKKTSSTSKISTTPTSPTSSKPTPTSTSMTTTYNWPTGG 867


>U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical
           protein R12C12.1a protein.
          Length = 979

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 229 IYNVNNATQLEI*ILRSQYSYTGCPTL*AEPHDCFTAEIGRVVVPTRADSQEVL 390
           IY +N AT+ ++  LR +     CP +   PH   +  +   V  T    Q+++
Sbjct: 459 IYTLNGATEKDVTKLREERWEVACPLIGNSPHSRSSLFLQHPVFNTHQSEQQLV 512


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,498,518
Number of Sequences: 27780
Number of extensions: 350543
Number of successful extensions: 799
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)