Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k02r
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48990.1 68418.m06061 kelch repeat-containing F-box family pr...    31   0.77 
At5g54610.1 68418.m06800 ankyrin repeat family protein contains ...    28   7.2  
At1g53325.1 68414.m06044 F-box family protein-related contains w...    28   7.2  
At1g76820.1 68414.m08939 expressed protein                             27   9.5  

>At5g48990.1 68418.m06061 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 372

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 229 CL*TPVILTPGWL*AH-PPNYVINEKNRRYQSDSSVHSSRLIRLINSP 89
           CL  P    P WL  +  PN  + +K ++ + DSSVH    I ++NSP
Sbjct: 73  CLRFPDEANPRWLILYRKPNQTLTKKKKK-KEDSSVHLLAPIPILNSP 119


>At5g54610.1 68418.m06800 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 426

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 184 ELTANLVLRLPESIDIYNVNNATQLEI*ILRSQY 285
           +L  + +L  PESI   NVN  T L I I+  +Y
Sbjct: 119 DLLTDFLLACPESIKDVNVNGETILHITIMNDKY 152


>At1g53325.1 68414.m06044 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain; similar to suppressor of nim1-1 (GI:22023774)
           [Arabidopsis thaliana]
          Length = 168

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = -1

Query: 572 WTDSRSKDILM*TCVFSDVKKKTTNRISIVIFYK----TVFEQTKSKRDIHI 429
           W D  SK+ L   C+     KK+T    I+  YK    +V EQ K  R+I I
Sbjct: 20  WLDF-SKETLKMFCILPCKAKKSTTHTRILSIYKGDRFSVMEQCKRTREIEI 70


>At1g76820.1 68414.m08939 expressed protein
          Length = 266

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 721 RQTSAEDPDTGAPSHVSDIRGSGPGPVVRDLRLYEPRRR 605
           +  S E+ D   P  V+ +  +G     R LRL +PR+R
Sbjct: 207 KPASEEEKDQAQPEPVAPVENTGEKEKRRLLRLLQPRKR 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,433,450
Number of Sequences: 28952
Number of extensions: 321870
Number of successful extensions: 652
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)