Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k02f
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.05 |||DUF1763 family protein|Schizosaccharomyces pombe|c...    27   2.4  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.1  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   4.1  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    26   4.1  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    26   4.1  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    26   5.5  

>SPAC806.05 |||DUF1763 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +2

Query: 92  RSRCGSARAHTGTTTSRPYTLSASSTRPYISTCQKRGNIRGL 217
           R + G   AH  T   RPY LSA  T  Y    Q+ G I  L
Sbjct: 84  RRKAGQRLAHYSTAKERPYFLSAYDT--YEWCLQRVGTIYNL 123


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 612  SPDGVLEGVREVEGAPLQVPAEA 544
            +PDGV+ G+    G PLQ  A+A
Sbjct: 1554 NPDGVIVGIDRKSGKPLQSHAKA 1576


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 19/73 (26%), Positives = 30/73 (41%)
 Frame = +1

Query: 397 KADPRGRLFAGTMGHEYEPGKFDLKKGSLYRIDPDGSVHRLESNIDISNGLCWDLQRSAF 576
           K  P G L+      E++  K      + Y++ PD SV++        N L  DL R+  
Sbjct: 229 KEVPTGELYEKRCADEFKTRKDSGNGATYYKVIPDPSVNKDTPTESDLNRLKADLLRAQL 288

Query: 577 YFADSFEYTIRRY 615
               ++E   R Y
Sbjct: 289 KKDPNYESLEREY 301


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 301 EIQWTGEDQTARLVRTVAEVDQDN 372
           EI   GE+   +LVR++A++ QD+
Sbjct: 285 EIHLCGEESVVKLVRSIAKMTQDD 308


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 335 LAVWSSPVHCISTTSLSRPTTKWCFFPSMGIMKVGFPS 222
           L+  S+P   +S TSL    + W  FP + +  V FP+
Sbjct: 40  LSTLSAPSFILSGTSLLEYMSYWFEFPELFVTIVDFPT 77


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 117 PTLGPQRAGPILCQHLRRDH 176
           P LGP  A PI  + L RDH
Sbjct: 363 PGLGPSTAEPIAVEDLLRDH 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,608
Number of Sequences: 5004
Number of extensions: 51863
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)