Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k02f
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0088 - 627825-628984,629339-629509,629612-630416 33 0.20
02_05_0278 + 27404914-27404947,27405088-27405228,27405747-274057... 30 1.9
10_08_0708 + 20040482-20040808,20040906-20041280 29 2.4
03_06_0601 + 34991912-34992352,34993719-34994516 29 2.4
08_02_0670 - 19877091-19877618,19880033-19880436,19880505-19880622 29 4.3
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 28 5.6
01_05_0551 + 23169751-23170491 28 5.6
06_01_0830 + 6261629-6261704,6261829-6261974,6262086-6262310,626... 28 7.5
05_01_0164 + 1134815-1134911,1135078-1135278,1135875-1136156,113... 28 7.5
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 27 9.9
04_04_1014 - 30111658-30112456,30112777-30113054,30114060-30114200 27 9.9
04_04_1007 - 30050955-30051753,30052074-30052351,30053357-30053497 27 9.9
03_03_0126 + 14665374-14665539,14665790-14666127 27 9.9
02_05_1158 - 34550049-34551241,34551354-34551521,34551847-345522... 27 9.9
01_06_0039 + 25857805-25858894,25858997-25859345,25860019-258601... 27 9.9
01_06_0030 + 25756294-25756575,25756977-25757101,25757276-257573... 27 9.9
>02_01_0088 - 627825-628984,629339-629509,629612-630416
Length = 711
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/54 (38%), Positives = 26/54 (48%)
Frame = -3
Query: 233 GFPSSLDLVCFPVSGTYLCMVSSKMLTKYRACSLWSQCGPSPSHTGSVTACNCG 72
G P+ LD V +G C + K T Y S S C SP+ TG + ACN G
Sbjct: 207 GVPTVLDWV----AGRESCAQAPKNRTSYACVSTNSSCINSPNATGYLCACNNG 256
>02_05_0278 +
27404914-27404947,27405088-27405228,27405747-27405772,
27406036-27406071,27406296-27406976
Length = 305
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 98 RCGSARAHTGTTTSRPYTLSASSTRPYISTCQK-RGNIRG 214
RC SARA + +++ P AS RP +S+ + RG RG
Sbjct: 252 RCASARAASRRSSAAPARRRASEPRPRVSSAMRVRGLARG 291
>10_08_0708 + 20040482-20040808,20040906-20041280
Length = 233
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -2
Query: 543 VGDVDVGLEAVHGAVRVDAVQRPLLQVELSRFVFVTHRSGKQPAPG 406
+G V VG EAVHG DA + PLL L RF + P G
Sbjct: 170 IGFVRVG-EAVHGMRLFDASRSPLLDAWLDRFAALDAAKAVLPDTG 214
>03_06_0601 + 34991912-34992352,34993719-34994516
Length = 412
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -2
Query: 615 VSPDGVLEGVREVEGAPLQVPAEAVGDVDV--GLEAVHGAVRVDAVQR 478
V P V E + + + AEA GDV V + AV GAVRVD V+R
Sbjct: 366 VRPPWVKEAIVSDDESAAAATAEA-GDVPVPRAVPAVRGAVRVDGVRR 412
>08_02_0670 - 19877091-19877618,19880033-19880436,19880505-19880622
Length = 349
Score = 28.7 bits (61), Expect = 4.3
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Frame = +1
Query: 328 TARLVRTVAEVDQDNPNNRFNDAK--ADPRGRLFAGTMGHEYEPGKFDLKKGSLYRIDPD 501
+A + EVDQ + + A G L A GH+ P K DL D D
Sbjct: 191 SATITTAAQEVDQPDEHTEAASTTGFATVDGALAAPPPGHQQPPHKDDLVSSGGTNDDGD 250
Query: 502 GSVHRLESNIDISNGLCWDLQRSAFYFADSFE 597
G + D++ G L + YFAD+ E
Sbjct: 251 GGAAVVV--FDVTEGANDRLSCESAYFADAAE 280
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 76 QLQAVTEPVWLGEGPHWDHNEQALYFVSIFDETIHKYVPET-GKHTRSKLDGKP 234
+ + V+E + GEG HW A +D HK P++ GKH S G+P
Sbjct: 2030 RFRMVSETCFEGEGSHW-----ASSAFHTYDAGRHKSGPKSIGKHKASSESGRP 2078
>01_05_0551 + 23169751-23170491
Length = 246
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Frame = +1
Query: 109 GEGPH---WDHNEQAL-YFVSIFDETIHKYVPE------TGKHTRSKLDGKPTFI-IPIE 255
GE P WD E+ L Y++ + ++++HKY+ + G H GKP + +
Sbjct: 182 GEEPQPLDWDFLEELLFYYLQLNEQSVHKYILKAFADLTAGAHVSCPARGKPQWADKSVR 241
Query: 256 GKKHH 270
+KH+
Sbjct: 242 SRKHY 246
>06_01_0830 +
6261629-6261704,6261829-6261974,6262086-6262310,
6262910-6263122,6264007-6264300
Length = 317
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +1
Query: 289 RLVVEIQWTGEDQTARLVRTVAEVDQDNPNNRFNDAKADPRGRLFAGTMGHEYE 450
RL + T E+ R++ T AEVD + + P R AG +YE
Sbjct: 253 RLAIAGMGTDENSLTRIITTRAEVDLKLITEAYQKRNSVPLERAVAGDTSGDYE 306
>05_01_0164 +
1134815-1134911,1135078-1135278,1135875-1136156,
1136237-1136271,1136356-1136445,1137228-1137357,
1137400-1138004,1138128-1138562
Length = 624
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 322 LLLSIVSPRPACPDPPRNGVSSLL 251
LLL + SP P PDPP G ++
Sbjct: 15 LLLDLTSPPPLHPDPPHAGCDEVM 38
>07_03_0329 + 16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 163 FDETIHKYVPETGKHTRSKLDGKPTFIIPIEGKKHH 270
F + + +PE K +S GKP + K+HH
Sbjct: 922 FQQVVESEIPEIEKAWKSLYAGKPRITFIVVQKRHH 957
>04_04_1014 - 30111658-30112456,30112777-30113054,30114060-30114200
Length = 405
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 17 PNPRCSLVLEALEPNLIW 70
PNP+ +VLE L+PN W
Sbjct: 268 PNPKQQIVLENLKPNPFW 285
>04_04_1007 - 30050955-30051753,30052074-30052351,30053357-30053497
Length = 405
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 17 PNPRCSLVLEALEPNLIW 70
PNP+ +VLE L+PN W
Sbjct: 268 PNPKQQIVLENLKPNPFW 285
>03_03_0126 + 14665374-14665539,14665790-14666127
Length = 167
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 91 TEPVWLGEGPHWDHNEQALYFVSIFDETIHKYVPETGKHTRSK 219
T P G G H+D N+ + + F T+ + E G+ + K
Sbjct: 33 TPPQDRGHGRHYDRNQHRYWLKATFSTTVTGFGGEGGRRMQKK 75
>02_05_1158 -
34550049-34551241,34551354-34551521,34551847-34552231,
34552245-34552772
Length = 757
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 179 CMVSSKMLTKYRACSLWSQCGPSPSHTGSVTACNCG 72
C V+ + TKY S WS+C + G C+ G
Sbjct: 257 CRVAKRNATKYACRSEWSECFDASDGVGYRCRCSNG 292
>01_06_0039 +
25857805-25858894,25858997-25859345,25860019-25860104,
25860242-25860399,25861489-25861565,25861656-25861722
Length = 608
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -2
Query: 642 DAPGLHVVVVSPDGVLEGVREVEGAPLQVPAEAVGDVDVGLEAVHGAVRVDAVQ 481
DA LH+ V S V EV G P+ G +DVG + +H + D Q
Sbjct: 306 DAKELHMFVWSSSA--SPVSEVSGLPVFSGGGGGGALDVGAKEIHMVIPADLPQ 357
>01_06_0030 +
25756294-25756575,25756977-25757101,25757276-25757313,
25757501-25757611,25757703-25757782,25758264-25758318,
25758465-25758851,25759080-25759223,25759630-25759671,
25759755-25759837
Length = 448
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 130 GPSVGPRRATPAPSQLVTAAP 68
G S PRR TPAP+ AAP
Sbjct: 52 GGSPVPRRTTPAPADAAAAAP 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,095,250
Number of Sequences: 37544
Number of extensions: 404183
Number of successful extensions: 1570
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1568
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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