Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k02f
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58332| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_41231| Best HMM Match : ARID (HMM E-Value=0)                        29   4.4  
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)              28   5.8  
SB_403| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.8  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)               28   7.6  
SB_14161| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_58332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 106 LGEGPHWDHNEQALYFVSIFDETIHKYVPETGKHTRSKLDGKPTFIIP 249
           L EGPHWD     L ++    + +H    ++GK  +SK +   T+I P
Sbjct: 17  LCEGPHWDEASGKLVWMDCMQKLVHVTDVDSGKVDKSKQE-TLTYISP 63


>SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 345  PDEPGRLVFSCPLYLH--DQPVQTHHEMVFLPFYGYNEG 235
            P+E   LV SC LY++  D P+    +   +PFY   +G
Sbjct: 1125 PEEDASLVASCMLYMNTIDDPLPLSKDESEVPFYSAEQG 1163


>SB_41231| Best HMM Match : ARID (HMM E-Value=0)
          Length = 358

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -3

Query: 614 YLLMVYSKESAK*KALRCRSQQRPLEMSMLDSRRCTEPSGSMRYRDPFFRSNFPGSYS 441
           Y+  +Y  E +K K       Q  ++ +  DSRR     GS    D + R++ P SYS
Sbjct: 87  YMKYLYPYECSKRKLSTPSELQAAIDGNRRDSRRTYGSFGSPGNHDSYSRTSPPSSYS 144


>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
          Length = 1290

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 317 PVHCISTTSLSRPT-TKWCFFPSMG 246
           P+HC  + S S PT TK  F PS G
Sbjct: 637 PIHCSQSASSSNPTGTKGKFIPSTG 661


>SB_403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1357

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = +1

Query: 358 VDQDNPNNRFNDAKADPRGRLFAGTMGHEYEPGKFDLKKGSLYRIDPDGSV 510
           VD D PNN F+ +   P+G L  G+ G    P  FD   G L   D DG +
Sbjct: 91  VDVDVPNNNFSGSINGPKGSL-QGSGGSLNGPSSFD--NGGL---DADGKI 135


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 313  TGEDQTARLVRTVAEVDQDNPNNRFN-DAKADPRGRLFAGTMGHEYEPGKFDLKK 474
            TG + T  L+  +    QD     F+ D + DP+GRL A   GH +  G  D ++
Sbjct: 1230 TGYNGTRNLMVHLHYAGQDKKFVAFSEDGETDPKGRLDADMPGHAWCAGIQDTRQ 1284


>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
          Length = 540

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
 Frame = -3

Query: 281 PTTKWC-FFPSMGIMKVGFPSSLDLVCFPVSGTYLCM---VSSKMLTKYRA-------CS 135
           P T  C F P   +M + FPS   +  FP++ +  C+   V   M +  RA         
Sbjct: 146 PITCSCRFVPQSMLMSMCFPSRAHVDVFPITCSCRCVPHHVLMSMCSPSRAHVDVFPYHV 205

Query: 134 LWSQCGPSPSHTGSV-TACNCGAI 66
           L S C PS +H      AC+C  +
Sbjct: 206 LMSMCSPSRAHVDVFPIACSCRCV 229


>SB_14161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = -3

Query: 365 WSTSATVLTSLAVWSSPVHCISTTSLSRPTTKWCFFPSMGIM 240
           W+    V+ S+       + +S   L RP+ KW +    G M
Sbjct: 8   WNPKKEVINSIEALEMLGYAVSLNELDRPSNKWVYSKRAGCM 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,140,088
Number of Sequences: 59808
Number of extensions: 445606
Number of successful extensions: 1461
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)