Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k02f
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81132-8|CAB03429.1|   90|Caenorhabditis elegans Hypothetical pr...    33   0.18 
Z81132-7|CAB03428.1|   86|Caenorhabditis elegans Hypothetical pr...    33   0.18 
U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily ass...    32   0.41 
U53148-3|AAB37077.1|  282|Caenorhabditis elegans Ground-like (gr...    29   3.8  
AF026209-10|AAB71273.2|  355|Caenorhabditis elegans Serpentine r...    29   3.8  
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    28   5.0  
U28971-1|AAA68376.2|  551|Caenorhabditis elegans Egg sterile (un...    28   5.0  
U97009-8|AAC69032.1|  534|Caenorhabditis elegans Udp-glucuronosy...    28   6.7  
Z81128-10|CAB03395.3|  467|Caenorhabditis elegans Hypothetical p...    27   8.8  
Z81033-3|CAD36479.1|  467|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AL023824-1|CAD36497.1|  467|Caenorhabditis elegans Hypothetical ...    27   8.8  
AF487547-1|AAL93258.1|  467|Caenorhabditis elegans ARID DNA bind...    27   8.8  
AC025715-5|AAP13755.1|  281|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z81132-8|CAB03429.1|   90|Caenorhabditis elegans Hypothetical
           protein T26E4.10 protein.
          Length = 90

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 140 CSLWSQCGPSPSHTGSVTACNCG 72
           C  W  CGP+P    +   CNCG
Sbjct: 60  CDCWGCCGPTPDPAATPAPCNCG 82


>Z81132-7|CAB03428.1|   86|Caenorhabditis elegans Hypothetical
           protein T26E4.9 protein.
          Length = 86

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 140 CSLWSQCGPSPSHTGSVTACNCG 72
           C  W  CGP+P    +   CNCG
Sbjct: 56  CDCWGCCGPTPDPAATPAPCNCG 78


>U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 52 protein.
          Length = 665

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 427 GTMGHEYEPGKFDLKKGSLYRIDPDGSVHRLESNIDISNGL 549
           G  GH  EPG+  LK+G LY+ + +GS +  E+ + + N +
Sbjct: 245 GLDGHILEPGRVLLKEGMLYKRELNGSANYQETVVFLFNDI 285


>U53148-3|AAB37077.1|  282|Caenorhabditis elegans Ground-like (grd
           related) protein10 protein.
          Length = 282

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 304 SPRPACPDPPRNGVS 260
           +PRPACP PP +G S
Sbjct: 36  APRPACPPPPPSGCS 50


>AF026209-10|AAB71273.2|  355|Caenorhabditis elegans Serpentine
           receptor, class i protein4 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 203 FPVSGTYLCMVSSKMLTKYRACSLWSQ 123
           F V G YL +  SK  T YR C L+ Q
Sbjct: 30  FNVFGIYLTLAKSKKNTNYRFCQLYVQ 56


>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 544  GLCWDLQRSAFYFADSFEYTIRRYDYD 624
            GL  DL     YF+DS ++ I R D+D
Sbjct: 2491 GLTIDLDSEKLYFSDSKDFKISRCDFD 2517


>U28971-1|AAA68376.2|  551|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein1 protein.
          Length = 551

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 194 SGTYLCMVSSKMLTKYRACSLWSQCGPSPSHT 99
           S TY+C  S++ L +   CS +S C P+ ++T
Sbjct: 503 SNTYMCNESNRCLKRDEVCSPYSMC-PNATYT 533


>U97009-8|AAC69032.1|  534|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein12 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 226 GKPTFIIPIEGKKHHFVVGLDR 291
           GKP  ++PI G +HH  V L R
Sbjct: 393 GKPAIVVPIFGDQHHNAVMLAR 414


>Z81128-10|CAB03395.3|  467|Caenorhabditis elegans Hypothetical
           protein T23D8.8 protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 115 GPHWDHNEQALYFVSIFDETIHKYVPETGKHTRSKLDGKPTFIIPIEGKKHHFVVGLDRL 294
           GP W + EQ      + D+   K   +   +   ++ GKP   IPI  K+   +  L RL
Sbjct: 163 GPAWSYEEQFKQLYELSDDVKRKEWLDDWLNFMHRI-GKPVTRIPIMAKQVLDLYELYRL 221

Query: 295 VVE 303
           VV+
Sbjct: 222 VVQ 224


>Z81033-3|CAD36479.1|  467|Caenorhabditis elegans Hypothetical
           protein T23D8.8 protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 115 GPHWDHNEQALYFVSIFDETIHKYVPETGKHTRSKLDGKPTFIIPIEGKKHHFVVGLDRL 294
           GP W + EQ      + D+   K   +   +   ++ GKP   IPI  K+   +  L RL
Sbjct: 163 GPAWSYEEQFKQLYELSDDVKRKEWLDDWLNFMHRI-GKPVTRIPIMAKQVLDLYELYRL 221

Query: 295 VVE 303
           VV+
Sbjct: 222 VVQ 224


>AL023824-1|CAD36497.1|  467|Caenorhabditis elegans Hypothetical
           protein T23D8.8 protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 115 GPHWDHNEQALYFVSIFDETIHKYVPETGKHTRSKLDGKPTFIIPIEGKKHHFVVGLDRL 294
           GP W + EQ      + D+   K   +   +   ++ GKP   IPI  K+   +  L RL
Sbjct: 163 GPAWSYEEQFKQLYELSDDVKRKEWLDDWLNFMHRI-GKPVTRIPIMAKQVLDLYELYRL 221

Query: 295 VVE 303
           VV+
Sbjct: 222 VVQ 224


>AF487547-1|AAL93258.1|  467|Caenorhabditis elegans ARID DNA binding
           protein CFI-1 protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 115 GPHWDHNEQALYFVSIFDETIHKYVPETGKHTRSKLDGKPTFIIPIEGKKHHFVVGLDRL 294
           GP W + EQ      + D+   K   +   +   ++ GKP   IPI  K+   +  L RL
Sbjct: 163 GPAWSYEEQFKQLYELSDDVKRKEWLDDWLNFMHRI-GKPVTRIPIMAKQVLDLYELYRL 221

Query: 295 VVE 303
           VV+
Sbjct: 222 VVQ 224


>AC025715-5|AAP13755.1|  281|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.3 protein.
          Length = 281

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 248 P*KGRNTISWWVWTGW 295
           P    N++ WW W GW
Sbjct: 4   PSTSSNSVGWWEWLGW 19


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,360,394
Number of Sequences: 27780
Number of extensions: 314549
Number of successful extensions: 984
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)