Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k02f
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54960.1 68416.m06094 thioredoxin family protein similar to p...    31   0.88 
At5g66710.1 68418.m08409 protein kinase, putative similar to pro...    29   2.7  
At2g36570.1 68415.m04485 leucine-rich repeat transmembrane prote...    28   4.7  
At2g21850.1 68415.m02596 DC1 domain-containing protein contains ...    28   6.2  
At2g32410.1 68415.m03960 auxin-resistance protein, putative stro...    27   8.2  

>At3g54960.1 68416.m06094 thioredoxin family protein similar to
           protein disulfide isomerase GI:5902592 from [Volvox
           carteri f. nagariensis], GI:2708314 from Chlamydomonas
           reinhardtii; contains Pfam profile: PF00085 Thioredoxin
          Length = 579

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +1

Query: 103 WLGEGPHWD--HNEQALYFVSIFDETIHKYVPETGKHTRSKLDGKPTFIIPIEGKKHH-- 270
           W G    ++  +N+   Y   I    + K    + +H R+K DG PT +    G K    
Sbjct: 466 WCGHCQSFEPIYNKLGKYLKGIDSLVVAKMDGTSNEHPRAKADGFPTILFFPGGNKSFDP 525

Query: 271 FVVGLDRLVVEI 306
             V +DR VVE+
Sbjct: 526 IAVDVDRTVVEL 537


>At5g66710.1 68418.m08409 protein kinase, putative similar to
           protein kinase ATN1 GP|1054633 [Arabidopsis thaliana]
          Length = 405

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 67  MAPQLQAVTEPVWLGEGPHWDHNEQALYFVSIFDETIHKYVPETGKH 207
           MAP+L +  + + +GE  H+DH      F  +F E +    P  GK+
Sbjct: 237 MAPELFSY-DTLEIGEKKHYDHKVDVYSFAIVFWELLTNKTPFKGKN 282


>At2g36570.1 68415.m04485 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 672

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 429 NDGSRIRTGKVRPEEGVSVPHRPGRLRAPPRVQHRHLQ 542
           ND     T ++ P    S+PH P  +R P    HR ++
Sbjct: 230 NDPESSNTDQIVPSNPTSIPHSPVSVREPEIHSHRGIK 267


>At2g21850.1 68415.m02596 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 772

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -3

Query: 218 LDLVCFPVSGTYLCMVSSKMLTKYRACSLWSQCGPSPSHTGSVTAC 81
           LD+ C  ++  +     SK L  Y  C L  +C P P   GS   C
Sbjct: 102 LDMGCALIASIFRGW-DSKDLLHYSHCHLLKRCRPGPDARGSCLLC 146


>At2g32410.1 68415.m03960 auxin-resistance protein, putative strong
           similarity to SP|P42744 Auxin-resistance protein AXR1
           {Arabidopsis thaliana}; contains Pfam profile PF00899:
           ThiF family
          Length = 523

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -3

Query: 155 TKY-RACSLWSQCGPSPSHTGSVTACNCG 72
           TKY R   +W + G S   T S+   NCG
Sbjct: 6   TKYDRQLRIWGELGQSALETASICLLNCG 34


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,783,433
Number of Sequences: 28952
Number of extensions: 296385
Number of successful extensions: 898
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)