Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k01r
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    27   3.6  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   8.4  
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    25   8.4  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   8.4  
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    25   8.4  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    25   8.4  

>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +1

Query: 415 VTSLTTTLLAPSRAKWATVPDALKMSEIGKV*SPSAFSM*IGSSPRS-WIPEVMRSMTFT 591
           V ++TTTL + S+A   TVP +  +S   +V  P+  ++       S  I   + + + T
Sbjct: 290 VGTVTTTLQSGSQAFTTTVPASGSVSGTVEVVQPTGGTVTNTVYEGSQTITSTLATASGT 349

Query: 592 INCSTKFCLSLSRSTFEGT-AATLAARVTSTNAKTFIV 702
           +  + +  L    + + GT A T+   V+ST A T +V
Sbjct: 350 VPGTVEVILPGPSTIYSGTVATTITYDVSSTPASTVVV 387


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 574 RSMTFTINCSTKFCLSLSRSTFEGTAATLAARVTSTNAKTFIVDFLL 714
           R+ TFT      +  S+S+ T      TL A        TF+V F+L
Sbjct: 129 RNKTFTAPQKPGYFESISQITSSPRLNTLIANTAEGQVLTFVVTFIL 175


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +3

Query: 498 WESVIAFGFFDVDWVESTLLDTGSDAIDDV--HNQLLDQILSFSLKVNF*GHSSDA 659
           W S+I+F FF V   +  L    S  + D    N  L  +  F++     G++S +
Sbjct: 2   WSSIISFLFFSVALCQPLLFQKRSSNVSDFISFNASLPNVTIFAMGGTIAGYASSS 57


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 524 KAEGDYTFPISDIFSASGTVAHLALEGASNVVVND 420
           + E D T  +SDI  A+  V     EGA   +V++
Sbjct: 263 RGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSE 297


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +3

Query: 498 WESVIAFGFFDVDWVESTLLDTGSDAIDDV--HNQLLDQILSFSLKVNF*GHSSDA 659
           W S+I+F FF V   +  L    S  I D    N  L  +  F++     G++S +
Sbjct: 2   WRSIISFLFFSVALCQPFLFQKRSSNISDFISFNASLPNVTIFAMGGTIAGYASSS 57


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 582 HRSHHFRYPRAWTRPNLHRKSRRRL 508
           H+ ++++ PRA  R + H   RRRL
Sbjct: 541 HKQYYWKKPRARPRSSGHSSRRRRL 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,208
Number of Sequences: 5004
Number of extensions: 49041
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)