Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k01r
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0287 - 2137425-2137581,2137981-2138117,2138246-2138515,213... 36 0.033
12_01_0278 - 2016172-2016262,2017057-2017140,2017701-2017837,201... 33 0.23
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 33 0.23
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531... 32 0.41
08_02_0423 - 16946435-16946542,16946924-16947045,16947442-169475... 29 5.0
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146... 28 6.6
11_08_0006 - 27548581-27549177 28 6.6
09_04_0461 + 17781413-17781474,17781576-17781629,17781729-177818... 28 6.6
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 28 6.6
>11_01_0287 -
2137425-2137581,2137981-2138117,2138246-2138515,
2138591-2138716,2138790-2138932,2139032-2139117,
2139574-2139752,2139941-2140210,2140282-2140380
Length = 488
Score = 35.9 bits (79), Expect = 0.033
Identities = 28/97 (28%), Positives = 44/97 (45%)
Frame = +3
Query: 63 LNNLPDLVVVSFEKFWKFVIQSVIQPLGYVLAEENNFESGLNIANSKNGTELPNADAR*Q 242
+ NLPDL V F KFV S++ LG ++ + GL I S +G+ P +
Sbjct: 61 VENLPDLRPVPFNNVQKFVPHSMVVALGRDISGKLMATGGLLIGGS-SGSYNPKLMSSTC 119
Query: 243 SYADCGDQTKVFDNKASTTGYSQFPAKDGGLTVDGDR 353
+++ + +FD G + +G L V GDR
Sbjct: 120 KFSEVYEGGPLFDFDGDFLGMNLSLTTEGTLFVPGDR 156
>12_01_0278 -
2016172-2016262,2017057-2017140,2017701-2017837,
2017961-2018230,2018306-2018430,2018515-2018646,
2018744-2018821,2019177-2019220,2019803-2019981,
2020168-2020428,2020528-2020655,2020749-2020853,
2020932-2021073
Length = 591
Score = 33.1 bits (72), Expect = 0.23
Identities = 27/97 (27%), Positives = 43/97 (44%)
Frame = +3
Query: 63 LNNLPDLVVVSFEKFWKFVIQSVIQPLGYVLAEENNFESGLNIANSKNGTELPNADAR*Q 242
+ NLPDL V F KFV S + LG ++ + SG+ I S NG + +
Sbjct: 153 VENLPDLRPVPFNNVQKFVPHSKVVALGRDISGKLMTTSGVLIGESYNGYLMSST----C 208
Query: 243 SYADCGDQTKVFDNKASTTGYSQFPAKDGGLTVDGDR 353
+++ + +FD G + +G + V GDR
Sbjct: 209 KFSEVYEGGPLFDFDGDFLGMNLSFTTEGTVFVPGDR 245
>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 33.1 bits (72), Expect = 0.23
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = -2
Query: 581 IDRITSGIQERGLDPIYIEKAEGDYTFPISDIFSASGTVAH 459
+ RI+ I+ERG++ + E+ +G Y+ + ++ ++S AH
Sbjct: 1346 VQRISHAIRERGMNNVLAERIQGKYSVALGNLMASSIVFAH 1386
>03_02_0058 -
5316112-5316418,5316497-5316705,5316773-5316859,
5316945-5317055,5317536-5317643,5319082-5319149,
5319269-5319320
Length = 313
Score = 32.3 bits (70), Expect = 0.41
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = -2
Query: 593 IVNVIDRITSGIQ-ERGLDPIYIEKAEGDYTFPISDIFSASGTVAHLALEGASNVVVNDV 417
++ + I+ I +RGL ++K G YT +S ++ T+ + ++ SN+
Sbjct: 61 VIKAVKNISMQIGGDRGLTSTAVKKG-GLYTLDVSSVYKYKSTLVDVKVDTESNISTTLT 119
Query: 416 TFNILRS-KFSVDLTLPKLSASSV 348
F++L S K + LP ++ V
Sbjct: 120 VFDVLPSTKLVTSVKLPDYNSGKV 143
>08_02_0423 -
16946435-16946542,16946924-16947045,16947442-16947504,
16949707-16949844,16950062-16950170,16950610-16950934,
16952482-16952645
Length = 342
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +3
Query: 255 CGDQTKVFDNKASTTGYSQFPAKDGGLTVDG---DRRGAELGEG 377
C + D A + Q PA+DGG TVD +R+G +G+G
Sbjct: 172 CSSHVEKGDKVAVSVAIEQ-PAEDGGWTVDAHHEERKGLYIGQG 214
>12_01_0199 -
1467137-1467172,1467302-1467391,1468304-1468396,
1468488-1469515,1470005-1470552,1470656-1470695,
1473774-1475196
Length = 1085
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = -2
Query: 482 SASGTVAHLALEGASNVVVNDVTFNILRSKFSVDLTLPKLSASSVAVNGEATIFGRELAV 303
SAS T A L + N+ + D + N+L F D L + GEA + ++
Sbjct: 130 SASATAARARLHDSGNLAIEDGSGNVLWQSF--DHPTDTLLPTQRIAAGEAMVSADKILA 187
Query: 302 ASSGSLVVEDLRLVSTV 252
A S D ++S V
Sbjct: 188 AGFYSFRFSDYAMLSLV 204
>11_08_0006 - 27548581-27549177
Length = 198
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 300 GYSQFPAKDGGLTVDGDRRGAELGEGKIDAEF*SQNVESDVIDDN--VAGAFESQVG 464
G QFP DGG ++DG G + + N D DN +G ES VG
Sbjct: 92 GQQQFPGNDGGRSIDGIDEGRVCNRQTQASRSVADNRGDDSRTDNNDDSGGGESNVG 148
>09_04_0461 +
17781413-17781474,17781576-17781629,17781729-17781839,
17781921-17781991,17782256-17782449,17783019-17783096
Length = 189
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -2
Query: 191 NVESALKVVLFGEDVSERLNDALNNKLPE 105
NVE+AL+VV +V+E+L + N LPE
Sbjct: 105 NVETALEVVEHAAEVTEKLAANVANALPE 133
>03_05_0432 -
24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +3
Query: 552 LLDTGSDAIDDVHNQLLDQILSFSLKVNF*GHSSDAGSESNKYKCE 689
LL+T SDA D N+L+++ L +L +F +D SE N K E
Sbjct: 736 LLNTISDAQDVKQNELVEKSLVVTLLEHFGQEVADLRSERNTLKQE 781
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,214,397
Number of Sequences: 37544
Number of extensions: 336357
Number of successful extensions: 1142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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