Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k01f
(595 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0) 33 0.23
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0) 31 0.53
SB_12770| Best HMM Match : MH1 (HMM E-Value=0) 29 2.1
SB_58559| Best HMM Match : AA_permease (HMM E-Value=1.5e-07) 29 2.8
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17) 29 2.8
SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9) 28 4.9
SB_33889| Best HMM Match : zf-CCHC (HMM E-Value=2.1e-05) 28 4.9
SB_51046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_30055| Best HMM Match : Histone (HMM E-Value=0.97) 28 6.5
SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11) 28 6.5
>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2418
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +2
Query: 341 FSVDLTLPKLSASSVAVNGEATIFGR---ELAVASSGSLVVEDLRLVSTVSIRLLPSISI 511
F+ D +P+L++ ++ +N + + G+ + S +V ED + +S V I L SIS
Sbjct: 1837 FAFDYGIPRLTSDTITLNVDGSAAGQLPPRFSKVSYHFMVSEDAKYLSLVGIILARSISG 1896
Query: 512 RELSAVLTVGNV 547
L + GNV
Sbjct: 1897 ARLDYKIVSGNV 1908
>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
Length = 2119
Score = 31.5 bits (68), Expect = 0.53
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = -2
Query: 222 SPSAFSM*IGSSPRSWIPE------VMRSMTFTINCSTKFCLSLSRSTFEGTAATLAARV 61
SP +SM SSP WIP V+RS T T S + + + RS +E A T++ V
Sbjct: 1321 SPVNYSMTNKSSPAQWIPSDDGGTPVVRSATHTPVESREASVFIVRSPYETLARTISQDV 1380
Query: 60 TST 52
T +
Sbjct: 1381 TQS 1383
>SB_12770| Best HMM Match : MH1 (HMM E-Value=0)
Length = 376
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 112 RKTEFGRAIDCERHRSHHFRYPRAWTRPNLHRKSRRRLHFPNF 240
++T GR CER H Y R W P++ + + L F F
Sbjct: 84 QRTLDGRLQVCERKGFPHVIYARLWRWPDIQKMEMKHLDFCRF 126
>SB_58559| Best HMM Match : AA_permease (HMM E-Value=1.5e-07)
Length = 530
Score = 29.1 bits (62), Expect = 2.8
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Frame = +2
Query: 266 VAHLALEGASNVVVNDVTFNILRSKF--SVDLTLPKLSASSV--AVNGEATIFGRELAVA 433
VA++ + GAS ++ ++ + + + V +P A+S AVNG GR L VA
Sbjct: 332 VAYITVLGASGILESEAVAVSVGNMYLGPVKWIVPLFVAASTFGAVNGMVLTNGRLLYVA 391
Query: 434 SSGSLVVEDLRLVSTVSIRLLPSISIRELSAVL 532
+ +L+ L ++ LPS+ L +V+
Sbjct: 392 ARDNLMPSLLAMIHVKRFTPLPSLLFTTLVSVI 424
>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
Length = 1440
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 163 DAIDDVHNQLLDQILSFSLKVNF*GHSSDAGSESNKYKCE 44
DAI+ HN+ + ++ VN G D +ESN ++ E
Sbjct: 349 DAIEQAHNRHVSNVVHLVPTVNQTGKDKDKDAESNDFRSE 388
>SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)
Length = 975
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +1
Query: 49 ICTCYSRCQRRCCALKS*P*ERKTEFGRAIDCERHRSHHFRYPRAWTRPNLHRKSRRRLH 228
+ T +R + +CC + +++ + GR + C R +RY RAW R ++ R RL
Sbjct: 11 VLTAPTRSRHQCCYRLNV--KKEVDVGRPL-CMRC----YRYARAWRREHMIPSVRERLE 63
Query: 229 --FPNF*HLQRIWHRSPLG 279
P +++ W P G
Sbjct: 64 RSIPTVGRVKQEWVAGPTG 82
>SB_33889| Best HMM Match : zf-CCHC (HMM E-Value=2.1e-05)
Length = 525
Score = 28.3 bits (60), Expect = 4.9
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +2
Query: 368 LSASSVAVNGEATIFGRELAVASSGSLVVEDLRLVS---TVSIRLLPSISIRELS-AVLT 535
LSASSV E G AV ++G VV+ L LV+ T +L + + +LS +L+
Sbjct: 318 LSASSVLEEPEEVTLGDGYAVEAAGKGVVK-LELVADGETKKCKLHDVLYVPKLSYNLLS 376
Query: 536 VGNVESALKVVLFGE 580
V V +A K V F E
Sbjct: 377 VSRVTNAGKAVEFNE 391
>SB_51046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 261
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 433 GYSQFPAKDGGLTVDGDRRGAELGEGKIDAE 341
G + P K+ G+ V+GD AELGE D E
Sbjct: 19 GVKEMP-KENGVLVNGDATAAELGEEDDDEE 48
>SB_30055| Best HMM Match : Histone (HMM E-Value=0.97)
Length = 129
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -1
Query: 448 KASTTGYSQFPAKDGGLTVDGDRRGAELGEGK 353
K T G FPA+DGGL V G G+ K
Sbjct: 52 KEQTNGRLDFPARDGGLLVVMTMSGRGKGKAK 83
>SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11)
Length = 587
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 446 LVVEDLRLVSTVSIRLLPSISIRELSAVLTVGNVESALKVV 568
L++ DLRL T + + + +I E+ + GNVESA+ V
Sbjct: 438 LMINDLRLADTHTWKYVNDTTIAEIVSRGFPGNVESAVSAV 478
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,549,536
Number of Sequences: 59808
Number of extensions: 324176
Number of successful extensions: 987
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -