Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k01f
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.2  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.1  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 284 EGASNVVVNDVTFNILRSKFSVDLTLPKLSASSV-AVNGEATIFGRELAVASSGSLVVED 460
           EG S +V++  TFN L S      T  K S+SSV      ATI   EL       L ++D
Sbjct: 310 EGVSCLVIDRETFNQLISSLDEIRTRYKDSSSSVEGWENRATI--PELN-EEFRDLRLQD 366

Query: 461 LRLVSTVSI 487
           LR ++T+ +
Sbjct: 367 LRPLATLGV 375


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +1

Query: 34  NEGLRICTCYSRCQRR 81
           N  + +C C  +C RR
Sbjct: 98  NSTIAVCVCMRKCPRR 113


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 368 LSASSVAVNGEATIFGRELA 427
           +S S +AVNG  T+F   L+
Sbjct: 261 MSLSPIAVNGYRTLFFHPLS 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,830
Number of Sequences: 438
Number of extensions: 2834
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)