Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j24r
         (754 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q64LI8 Cluster: Cytochrome c oxidase subunit 3; n=1; Mi...    33   7.6  

>UniRef50_Q64LI8 Cluster: Cytochrome c oxidase subunit 3; n=1;
           Microstomum lineare|Rep: Cytochrome c oxidase subunit 3
           - Microstomum lineare
          Length = 245

 Score = 33.1 bits (72), Expect = 7.6
 Identities = 23/79 (29%), Positives = 39/79 (49%)
 Frame = -2

Query: 717 ILSYKRFFYGTHGYYLNYIRHSNIGTKM*FKRIFCATADCEFELF*RLHFYNSVSP*RPK 538
           +LS   F YGT  + L  +   ++     F  I C +    F LF   H+ NS+S    +
Sbjct: 172 VLSLSSFTYGTTFFMLTGLHGFHV-----FVGIVCLSVLLYFTLF---HYINSLSLISSE 223

Query: 537 RVILFWNNLIIAFVCLYFF 481
            +I +W+ + I ++ +YFF
Sbjct: 224 CLIWYWHFVDIVWIFVYFF 242


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 639,890,116
Number of Sequences: 1657284
Number of extensions: 12148702
Number of successful extensions: 26717
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 25573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26689
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62146450145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)