Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j24r
         (754 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9163| Best HMM Match : XS (HMM E-Value=0.84)                        29   5.4  
SB_38600| Best HMM Match : Ank (HMM E-Value=6.9e-36)                   28   9.4  

>SB_9163| Best HMM Match : XS (HMM E-Value=0.84)
          Length = 424

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 425 CKPMCVLLVCEFNLFREK*KK 487
           CKP C +L C  N FR K KK
Sbjct: 377 CKPNCPILCCRSNPFRVKGKK 397


>SB_38600| Best HMM Match : Ank (HMM E-Value=6.9e-36)
          Length = 852

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 540 KRVILFWNNLIIAFVCLYFFYFSRNRLNSQTSKTHIGLHFCLRLIAK 400
           K V + WN + +  V   +   +  +LN Q +  ++GLH  L+ I +
Sbjct: 365 KAVAIIWNAMKLVSVHPQWIVDAAKKLNPQVAAGNVGLHPVLKTITR 411


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,824,190
Number of Sequences: 59808
Number of extensions: 373285
Number of successful extensions: 738
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)