Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j24r
         (754 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02460.1 68417.m00333 DNA mismatch repair protein, putative s...    32   0.47 
At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi do...    28   7.7  

>At4g02460.1 68417.m00333 DNA mismatch repair protein, putative
           similar to SP|P54278 PMS1 protein homolog 2 (DNA
           mismatch repair protein PMS2) {Homo sapiens}; contains
           Pfam profiles PF02518: ATPase, histidine kinase-, DNA
           gyrase B-, and HSP90-like domain protein, PF01119: DNA
           mismatch repair protein, C-terminal domain
          Length = 923

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = -3

Query: 677 IILITFDIPILGPKCDLNAFFARRLIVSSNYFKDCTFIIQFLRKGLNELF 528
           + ++ F +P  G  CDLN    +R +    +F D T +I  LR+GLNE++
Sbjct: 305 VTILDFIVP--GGACDLNVTPDKRKV----FFSDETSVIGSLREGLNEIY 348


>At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|Q9XGW1 PINHEAD
           protein (ZWILLE protein) {Arabidopsis thaliana};
           contains Pfam profiles PF02171: Piwi domain, PF02170:
           PAZ domain
          Length = 990

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 341 HVNIDIYRSILAMKYLIFYFCFEYEHFLCHN 249
           H N+++  S L   Y  +Y+C+ Y  F  HN
Sbjct: 48  HQNLNLVASNLPSSYYYYYYCYFYSQF--HN 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,794,114
Number of Sequences: 28952
Number of extensions: 262828
Number of successful extensions: 469
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)