Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j24f
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    32   0.079
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    27   3.0  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   6.9  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   6.9  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    25   9.1  

>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 31.9 bits (69), Expect = 0.079
 Identities = 22/65 (33%), Positives = 28/65 (43%)
 Frame = +1

Query: 334 DKHAARNDFRRFEEENASNERGNGKI*GRVRGVPQTVASGNYAKRRS*VRSGCPEPTYPT 513
           D H++R   R++E+E       NGK   R  G P  + SGN A   S      P   YPT
Sbjct: 3   DSHSSR---RKYEKEKLVFATNNGK---RTEGTPAFLKSGNTASSSSPTLQFRPTSRYPT 56

Query: 514 AGGGP 528
               P
Sbjct: 57  LSHEP 61


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 446 ATVCGTPRTRPYIFPFPLSFDAFSSSKRLKSFLAACLS 333
           A+V GTP  RP  F FP      S  K+     A  +S
Sbjct: 771 ASVDGTPMVRPLFFEFPKQISLASVDKQFMIGTALLIS 808


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 162 ELGRYKNIVTALITGNYVSLISPNEPALTIIINLFLMQLIFS 37
           E+G+ KN+V    +GN +  I P    LT +  + L   + S
Sbjct: 199 EIGKLKNLVILDASGNSIKTIPPELGLLTELREVLLFDNMIS 240


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 605 ARIHRRPGWPRTAWRWRSRDAPRTSRGPPPAVGYVGSGQPLRTQLL 468
           AR H RP   R + R + + A     G PP+  +  SG   R + L
Sbjct: 82  ARQHERPFRSRKSRRRKGKKAFSPRPGSPPSPSFYRSGSQKRARNL 127


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 242 SLARRYYFV----SLRWARHEHSRRIKWPPPNLDATKISLP 132
           S+A  YY+V    +  W+ HE + RI     N+  + +S+P
Sbjct: 325 SVANHYYYVGDPLTPGWSAHEETNRISPKDANVLPSIVSIP 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,937
Number of Sequences: 5004
Number of extensions: 40503
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)