Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10j24f
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0335 + 33211705-33211800,33211886-33211982,33212078-332122... 33 0.19
01_04_0051 + 15430980-15431591 29 3.1
09_02_0088 + 4136698-4136857,4137530-4137558,4137992-4138954,413... 29 4.1
08_01_0841 + 8223768-8223871,8227749-8228745,8228779-8228828,822... 28 5.4
07_01_1097 - 10068431-10068655,10068797-10068880,10068945-100692... 28 5.4
12_01_0611 - 5034481-5034709,5034863-5035020,5035231-5035475,503... 28 7.1
11_06_0238 - 21614535-21615347,21616759-21617352 28 7.1
03_04_0185 - 18213830-18214552 28 7.1
01_06_1594 + 38509676-38509776,38509808-38510096 28 7.1
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 28 7.1
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 27 9.4
11_04_0221 + 15021145-15022497 27 9.4
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220... 27 9.4
01_03_0202 - 13762042-13762572 27 9.4
>03_06_0335 +
33211705-33211800,33211886-33211982,33212078-33212204,
33212953-33213138,33213702-33213789,33214028-33214084,
33214171-33214260,33214339-33214461,33215024-33215098,
33215169-33215228,33215464-33215580,33215854-33216093,
33216181-33216246,33216370-33216459,33216914-33217003,
33217309-33217398,33217702-33217770,33217841-33217921,
33218108-33218215,33218336-33218439,33218822-33218935,
33219018-33219231
Length = 793
Score = 33.1 bits (72), Expect = 0.19
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = -2
Query: 201 SARTQPANKMAATELGRYKNIVTALITGNYVSLISPNEPALTIIINLFLMQLIFSTTTHS 22
S T+ + + L +Y NIVTAL NY ++ + + T ++ L ++Q I TT
Sbjct: 388 SRATKQIVALLSAPLEKYSNIVTALELSNYPRVMDYLDNSTTKVMALVIIQSIMKNTTCI 447
Query: 21 SKS 13
S S
Sbjct: 448 STS 450
>01_04_0051 + 15430980-15431591
Length = 203
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 517 GGGPREVRGASRDRHRQAVRGQP 585
GG P V+ A RD HR+A+R +P
Sbjct: 93 GGAPAWVQDARRDAHRRALRRRP 115
>09_02_0088 +
4136698-4136857,4137530-4137558,4137992-4138954,
4138973-4139301,4139398-4139485,4139766-4139864,
4139935-4140245,4140532-4140685
Length = 710
Score = 28.7 bits (61), Expect = 4.1
Identities = 25/103 (24%), Positives = 41/103 (39%)
Frame = +1
Query: 316 KVNQNDDKHAARNDFRRFEEENASNERGNGKI*GRVRGVPQTVASGNYAKRRS*VRSGCP 495
+ +Q K + EEE+ E G+G+ P+ + S A G P
Sbjct: 590 ETSQQRAKEEGEEEHDEGEEEHEEGEEGDGQSDEEEEEQPEEIGSSQLA--------GAP 641
Query: 496 EPTYPTAGGGPREVRGASRDRHRQAVRGQPGRR*IRANTQGAG 624
+P+ P+ G R + DR+ + P R +R T+G G
Sbjct: 642 QPSQPSQGRPQR--KRVPVDRY--CLTSAPNRMALRLYTEGNG 680
>08_01_0841 +
8223768-8223871,8227749-8228745,8228779-8228828,
8228896-8230396
Length = 883
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 125 ISAVTIFL*RPSSVAAILFAGCVRAEPISTIRNSNDERGCQLAFSRVGRRC 277
I ++T+F S+AA++ + +RA I + N+N+ + + RVG C
Sbjct: 535 IRSLTVFNEPSESIAALICSSKLRAVRILDLSNANEFKITRRDIERVGELC 585
>07_01_1097 -
10068431-10068655,10068797-10068880,10068945-10069292,
10069477-10069510,10069617-10070230,10079179-10079553,
10079599-10079853,10079983-10080300
Length = 750
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 236 RGCQLAFSRVGRRCLCLLAFKHSILTQK*IKMTTN 340
R C L FS+ RCL F H+ Q +KM+ N
Sbjct: 123 RACALDFSKDWERCLPYAEFSHNNSFQASLKMSPN 157
>12_01_0611 -
5034481-5034709,5034863-5035020,5035231-5035475,
5036686-5036983,5037644-5038482,5039763-5039823
Length = 609
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 418 RVRGVPQTVASGNYAKRRS*VRSGCPEPTYPTAGGGPREVRGASRDRH--RQAVRGQP 585
RV+ Q V G + + S + P PT P +G G G + RH R+ RG P
Sbjct: 30 RVKKPAQQVGKGQWGQWNS--PNAAPAPTAPRSGSGAFHHSGNTLVRHSDRRPARGTP 85
>11_06_0238 - 21614535-21615347,21616759-21617352
Length = 468
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 488 PLRTQLLLFA*FPLATVCGTPRTRPYIFPFPLSFDAF 378
P+ Q+L A V G RPYI F ++FD F
Sbjct: 312 PMSEQILFLASLVARRVFGLAGVRPYIPDFKMAFDHF 348
>03_04_0185 - 18213830-18214552
Length = 240
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 124 NQCGNDIFVASKFGGGHFIRRLCSCR 201
N C +F S G GH IR + SC+
Sbjct: 101 NYCHKILFACSSGGTGHLIRHIKSCK 126
>01_06_1594 + 38509676-38509776,38509808-38510096
Length = 129
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/63 (34%), Positives = 27/63 (42%)
Frame = +1
Query: 370 EEENASNERGNGKI*GRVRGVPQTVASGNYAKRRS*VRSGCPEPTYPTAGGGPREVRGAS 549
EEE A ++G G GR +G +RR +R PT GGG VRG
Sbjct: 58 EEEPALGKKGGGAS-GRE---DICTCTGEKRRRRRWIRLKAAAPTDAVRGGGGAGVRGER 113
Query: 550 RDR 558
R R
Sbjct: 114 RRR 116
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 484 SGCPEPTYPTAGGGPREVRGASRDRHRQAVR 576
SG PEPT A G VRG DR A +
Sbjct: 192 SGMPEPTSRAAAGAEAGVRGIMMDRFLPAAQ 222
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -3
Query: 629 GSPAPCVFARIHRRPGWPRTAWRWRSRDAPRTSRGPPPAVGYVGSGQPLR 480
G PAP P WP T A +S+ PPP +G G+ P R
Sbjct: 228 GPPAPSQQVPFGGAPQWPGTQPPPFGAQAAPSSQ-PPPFMGVPGNAPPFR 276
>11_04_0221 + 15021145-15022497
Length = 450
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 566 WRWRSRDAPRTSRGPPPAV 510
W +RDAPRT+ PPP V
Sbjct: 330 WDSPARDAPRTTPPPPPPV 348
>04_03_0153 +
11919769-11919880,11920190-11920488,11921909-11922024,
11922113-11922248,11922959-11923006,11924130-11924228,
11924317-11924385,11924465-11924599,11924687-11924755,
11925221-11925276,11925465-11925624,11926534-11926698,
11927484-11927568,11927646-11927849,11928396-11928487,
11928571-11928613,11930727-11930884,11931520-11931630,
11931947-11932012,11933716-11933784,11934181-11934255,
11934330-11934506,11934598-11934683,11936259-11936313,
11936901-11936939,11938105-11938230,11938319-11938432,
11939208-11939265,11939485-11939623,11939698-11939783,
11939842-11940041
Length = 1148
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +1
Query: 445 ASGNYAKRRS*VRSGCPEPTYPTAGGGPREVRGASRDRHRQAVRGQP 585
A G RRS RS T P A G P + + DR R A+ QP
Sbjct: 76 ARGILPVRRSSARSSTTALTCPAAAGDPNSL---ANDRKRDAIPKQP 119
>01_03_0202 - 13762042-13762572
Length = 176
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 599 IHRRPGWPRTAW-RWRSRDAPRTSRGPPPA 513
I RRP TA R R+R PRT R PP+
Sbjct: 44 IRRRPSASATATVRRRARTRPRTRRSKPPS 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,878,373
Number of Sequences: 37544
Number of extensions: 323032
Number of successful extensions: 1061
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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