Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j24f
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)                 52   4e-07
SB_36560| Best HMM Match : Tropomyosin (HMM E-Value=9.6e-07)           37   0.016
SB_35047| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_42247| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    27   9.6  
SB_9622| Best HMM Match : PAPA-1 (HMM E-Value=5.8)                     27   9.6  

>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
          Length = 442

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 30/91 (32%), Positives = 42/91 (46%)
 Frame = +2

Query: 359 LDVLKKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXXXXXXX 538
           ++ +KKKM                    L+    R + AE+EVAAL +++Q         
Sbjct: 1   METIKKKMATLRQTLEDAEARAAKAEDELKNANDRADSAETEVAALTKQLQQLEDDLDAA 60

Query: 539 XXXXATATAKLSEASQAADESERIRKALENR 631
               A    +L+EA + ADESER RK LENR
Sbjct: 61  ESKLADTQGQLTEAEKQADESERARKVLENR 91


>SB_36560| Best HMM Match : Tropomyosin (HMM E-Value=9.6e-07)
          Length = 245

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 26/91 (28%), Positives = 36/91 (39%)
 Frame = +2

Query: 359 LDVLKKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXXXXXXX 538
           +DVLKKK+ QT               K L++   R   AE E   L  RI+         
Sbjct: 1   MDVLKKKVVQTRQEIEKAENKERYIRKLLRLTSERATLAEMEADGLKNRIKEMEKQIERV 60

Query: 539 XXXXATATAKLSEASQAADESERIRKALENR 631
                     L+     AD+SE+ RKA+E +
Sbjct: 61  NARTERLGQGLTAKESEADDSEKDRKAMEGK 91


>SB_35047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 998

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 141 IVTALITGNYVSLISPNEPALTIIINLFLMQLIFSTTTHS 22
           I+ A++   +V L+    PAL  +IN+FL+ +  S   H+
Sbjct: 643 ILIAVVANGFVCLVIYKTPALHNVINMFLVSMSISDLLHA 682


>SB_42247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = -3

Query: 293 TLISRDTFVLLAKMPTDSLARRYYFVSLRWARHEHSRRIKWPPPNLDATK 144
           +++  D  +++     + LA + +F SL     +   +I+ PPP+L  T+
Sbjct: 444 SILGEDAVIIVTVQEMNELALKMFFNSLNCHASKLLEKIELPPPDLGPTE 493


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 22/76 (28%), Positives = 31/76 (40%)
 Frame = +1

Query: 163  GGGHFIRRLCSCRAHLNDTK**RRARLSVGIFASRTKVSLLISV*AFDFNTKVNQNDDKH 342
            G   F  +LC+C      TK      +    F  R K SLL SV        + +N +K 
Sbjct: 1362 GNRQFYCKLCNCYIASVITKELHAKSIKHVEFFVREKSSLLQSVLGVPTLNAIEKNQEKE 1421

Query: 343  AARNDFRRFEEENASN 390
             A    ++ EE+ A N
Sbjct: 1422 VAAEVPKQLEEQPARN 1437


>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 484 SGCPEPTYPTAGGGPREVRGASRDRHRQAVRGQPGRR*IRANTQGAGEP 630
           +G   P  PT   G + VRGA  +   + + G PG +  R  T   G P
Sbjct: 155 TGQTGPRGPTGPPGLQGVRGAPGNEGARGLPGNPGLKGKRGATGSRGSP 203


>SB_9622| Best HMM Match : PAPA-1 (HMM E-Value=5.8)
          Length = 281

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 523 GPREVRGASRDRHRQAVRGQPGRR*IRANTQGA 621
           G  EVR A RDR  Q    +PGR+   AN Q +
Sbjct: 113 GGEEVREAIRDRSSQPDYRRPGRQLSEANDQAS 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,643,685
Number of Sequences: 59808
Number of extensions: 336206
Number of successful extensions: 1035
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)