Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10j24f
(634 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein. 78 6e-15
D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein. 78 6e-15
AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical ... 78 6e-15
AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical ... 77 1e-14
AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin i... 77 1e-14
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 54 6e-08
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 54 6e-08
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 54 6e-08
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 54 6e-08
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 54 6e-08
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 54 6e-08
AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical ... 37 0.010
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 31 0.69
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p... 28 6.4
AL132877-6|CAE54913.1| 151|Caenorhabditis elegans Hypothetical ... 28 6.4
AF016450-6|AAB65982.1| 311|Caenorhabditis elegans Serpentine re... 28 6.4
>D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 77.8 bits (183), Expect = 6e-15
Identities = 42/97 (43%), Positives = 59/97 (60%)
Frame = +2
Query: 344 QQGTILDVLKKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXX 523
QQ ++LDVLKKKMRQ ++L+ E +RE+AE+EVAALNRRI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRIVLVEE 69
Query: 524 XXXXXXXXXATATAKLSEASQAADESERIRKALENRT 634
TAT+KL +A++AADE++R RK++E R+
Sbjct: 70 DLERTEDRLKTATSKLEQATKAADEADRARKSMETRS 106
>D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 77.8 bits (183), Expect = 6e-15
Identities = 42/97 (43%), Positives = 59/97 (60%)
Frame = +2
Query: 344 QQGTILDVLKKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXX 523
QQ ++LDVLKKKMRQ ++L+ E +RE+AE+EVAALNRRI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRIVLVEE 69
Query: 524 XXXXXXXXXATATAKLSEASQAADESERIRKALENRT 634
TAT+KL +A++AADE++R RK++E R+
Sbjct: 70 DLERTEDRLKTATSKLEQATKAADEADRARKSMETRS 106
>AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1e protein.
Length = 256
Score = 77.8 bits (183), Expect = 6e-15
Identities = 42/97 (43%), Positives = 59/97 (60%)
Frame = +2
Query: 344 QQGTILDVLKKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXX 523
QQ ++LDVLKKKMRQ ++L+ E +RE+AE+EVAALNRRI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRIVLVEE 69
Query: 524 XXXXXXXXXATATAKLSEASQAADESERIRKALENRT 634
TAT+KL +A++AADE++R RK++E R+
Sbjct: 70 DLERTEDRLKTATSKLEQATKAADEADRARKSMETRS 106
>AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1c protein.
Length = 256
Score = 76.6 bits (180), Expect = 1e-14
Identities = 42/96 (43%), Positives = 58/96 (60%)
Frame = +2
Query: 344 QQGTILDVLKKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXX 523
QQ ++LDVLKKKMRQ ++L+ E +RE+AE+EVAALNRRI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRIVLVEE 69
Query: 524 XXXXXXXXXATATAKLSEASQAADESERIRKALENR 631
TAT+KL +A++AADE++R R+AL N+
Sbjct: 70 DLERTEDRLKTATSKLEQATKAADEADRSRRALSNQ 105
>AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin
isoform IV protein.
Length = 256
Score = 76.6 bits (180), Expect = 1e-14
Identities = 42/96 (43%), Positives = 58/96 (60%)
Frame = +2
Query: 344 QQGTILDVLKKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXX 523
QQ ++LDVLKKKMRQ ++L+ E +RE+AE+EVAALNRRI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRIVLVEE 69
Query: 524 XXXXXXXXXATATAKLSEASQAADESERIRKALENR 631
TAT+KL +A++AADE++R R+AL N+
Sbjct: 70 DLERTEDRLKTATSKLEQATKAADEADRSRRALSNQ 105
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 54.4 bits (125), Expect = 6e-08
Identities = 32/88 (36%), Positives = 44/88 (50%)
Frame = +2
Query: 371 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXXX 550
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERL 106
Query: 551 ATATAKLSEASQAADESERIRKALENRT 634
AT KL EA+ DESER+RK +ENR+
Sbjct: 107 KIATEKLEEATHNVDESERVRKVMENRS 134
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 54.4 bits (125), Expect = 6e-08
Identities = 32/88 (36%), Positives = 44/88 (50%)
Frame = +2
Query: 371 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXXX 550
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERL 106
Query: 551 ATATAKLSEASQAADESERIRKALENRT 634
AT KL EA+ DESER+RK +ENR+
Sbjct: 107 KIATEKLEEATHNVDESERVRKVMENRS 134
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 54.4 bits (125), Expect = 6e-08
Identities = 32/88 (36%), Positives = 44/88 (50%)
Frame = +2
Query: 371 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXXX 550
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERL 106
Query: 551 ATATAKLSEASQAADESERIRKALENRT 634
AT KL EA+ DESER+RK +ENR+
Sbjct: 107 KIATEKLEEATHNVDESERVRKVMENRS 134
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 54.4 bits (125), Expect = 6e-08
Identities = 32/88 (36%), Positives = 44/88 (50%)
Frame = +2
Query: 371 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXXX 550
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERL 106
Query: 551 ATATAKLSEASQAADESERIRKALENRT 634
AT KL EA+ DESER+RK +ENR+
Sbjct: 107 KIATEKLEEATHNVDESERVRKVMENRS 134
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 54.4 bits (125), Expect = 6e-08
Identities = 32/88 (36%), Positives = 44/88 (50%)
Frame = +2
Query: 371 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXXX 550
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERL 106
Query: 551 ATATAKLSEASQAADESERIRKALENRT 634
AT KL EA+ DESER+RK +ENR+
Sbjct: 107 KIATEKLEEATHNVDESERVRKVMENRS 134
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 54.4 bits (125), Expect = 6e-08
Identities = 32/88 (36%), Positives = 44/88 (50%)
Frame = +2
Query: 371 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXXX 550
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERL 106
Query: 551 ATATAKLSEASQAADESERIRKALENRT 634
AT KL EA+ DESER+RK +ENR+
Sbjct: 107 KIATEKLEEATHNVDESERVRKVMENRS 134
>AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical
protein Y105E8B.1b protein.
Length = 193
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +2
Query: 557 ATAKLSEASQAADESERIRKALENRT 634
AT KL EA+ DESER+RK +ENR+
Sbjct: 18 ATEKLEEATHNVDESERVRKVMENRS 43
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 31.1 bits (67), Expect = 0.69
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = +1
Query: 421 VRGVPQTVASGNYAKRRS*VRSGCPE-PTYPTAGGGPREVRGASRDRHRQAVRGQPGRR* 597
VRG P + R V +G P PT P GPR + G + + GQPG R
Sbjct: 183 VRGEPGSPGEKGPTGDRGKVLNGAPPGPTGPPGKVGPRGLSGGKGHDGKPGLGGQPGVRG 242
Query: 598 IRANTQGAGEP 630
AG P
Sbjct: 243 AVGARGDAGNP 253
>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
protein F44D12.1 protein.
Length = 1034
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 440 RLQVEIMRREEAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESER 607
RLQ EI + +E EVAAL ++++ A A A+ A E+E+
Sbjct: 95 RLQKEIEKMKEDSEEVAALKQKLENTRRLLKVNMEETAQANARKEAAIARLTEAEQ 150
>AL132877-6|CAE54913.1| 151|Caenorhabditis elegans Hypothetical
protein Y105E8B.1f protein.
Length = 151
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 371 KKKMRQTXXXXXXXXXXXXXYHKRLQVEIMRREEAESEVAALNRRI 508
+KKM QT +L+ + +EAE+EVA+LNRR+
Sbjct: 47 QKKMTQTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRM 92
>AF016450-6|AAB65982.1| 311|Caenorhabditis elegans Serpentine
receptor, class t protein67 protein.
Length = 311
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 348 CCMFVVILIHFCVKIECLNANKQRHLRPTRENAN*QPRSS 229
C ++++ H ++I+CL K R+ T++ PRSS
Sbjct: 272 CHPIIILIFHKTIRIDCLLKLKLRYNSSTQQRVWKPPRSS 311
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,175,766
Number of Sequences: 27780
Number of extensions: 255565
Number of successful extensions: 842
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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