Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j24f
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61670.1 68416.m06911 expressed protein weak similarity to ex...    29   3.4  
At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative St...    28   4.5  
At1g19680.1 68414.m02453 expressed protein                             28   5.9  
At5g43760.1 68418.m05352 beta-ketoacyl-CoA synthase, putative si...    27   7.8  

>At3g61670.1 68416.m06911 expressed protein weak similarity to
           extra-large G-protein [Arabidopsis thaliana] GI:3201682
          Length = 790

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 115 VASNQCGNDIFVASKFGGGHFIRRLCSCRAHLNDTK 222
           V +N  G+D+F A     GHF    CSC  H  D K
Sbjct: 303 VGNNNNGHDLFDAYPQQNGHFHHSSCSC-YHCYDNK 337


>At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative
           Strong similarity to beta-keto-Coa synthase gb|U37088
           from Simmondsia chinensis, GI:4091810
          Length = 528

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 488 PLRTQLLLFA*FPLATVCGTPRTRPYIFPFPLSFDAF 378
           P+  QLL FA      V    + +PYI  F L+F+ F
Sbjct: 372 PMSEQLLFFATLVARKVFNVKKIKPYIPDFKLAFEHF 408


>At1g19680.1 68414.m02453 expressed protein
          Length = 444

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = -2

Query: 210 EMGSARTQPANKMAATELGRYKNIVTALITGNYVSLISPNEPALTIIINLFLMQLIFSTT 31
           E G   T  + K A +E+G   ++VTA + G  +++ SP++ +L   + + +  ++ S+ 
Sbjct: 72  ETGGLATLGSQKSADSEMGT-ASMVTAPLAGTSLAIRSPSDVSLASPVRVEVKNIVDSSD 130

Query: 30  THSS 19
             SS
Sbjct: 131 IVSS 134


>At5g43760.1 68418.m05352 beta-ketoacyl-CoA synthase, putative
           similar to beta-ketoacyl-CoA synthase [Simmondsia
           chinensis][GI:1045614]
          Length = 529

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 488 PLRTQLLLFA*FPLATVCGTPRTRPYIFPFPLSFDAF 378
           P+  QLL FA      V    + +PYI  F L+F+ F
Sbjct: 380 PMSEQLLFFATLVARKVFKVKKIKPYIPDFKLAFEHF 416


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,390,052
Number of Sequences: 28952
Number of extensions: 227914
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)