Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j22r
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    44   1e-06
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   5.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.7  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 11/187 (5%)
 Frame = -2

Query: 684 VQSLRSEGITVEGVVCHVANHEHRRRLFEVATSKFGGVDILXXXXXXXXXXXSILDTDEQ 505
           V+ L+S+   +  + C ++N     ++ E      G +DIL             L  DE 
Sbjct: 48  VEELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVT--LQNDEV 105

Query: 504 V-WDKIFDVNVKSSWLLAKEAYPELVKRG--GGSIVFI---SSIAAYQPTEPLGAYGVSK 343
           + W KIFD+N+     + +E    + K+G   G IV I   S +          AY  SK
Sbjct: 106 LDWKKIFDINLLGLTCMIQEVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASK 165

Query: 342 TTLLGLTKAIANETV--HENIRVNCVAPGIVVTKFAS--AITNSEAGAE-KSLSNVPLKR 178
             L  LT  + +E      NI+V  ++P +V T   +     NS    + K +SN  L  
Sbjct: 166 CALTTLTDCLRSELAQCESNIKVISISPDLVETDMTAQWLKENSRLALKPKDVSNCVLFA 225

Query: 177 FGRPEEI 157
              P+ +
Sbjct: 226 LQTPDNV 232


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 363 GAYGVSKTTLLGLTKAIANETVHENI 286
           G Y +S    LGLT+  A + +H+ I
Sbjct: 320 GIYDISNKRRLGLTEYQAVKEMHDGI 345


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 413 LPPPLLTSSGYASLANSQELFTLTSNILSQTCS 511
           L  P+L+SS   +   +    T+  N L+ TCS
Sbjct: 318 LEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTCS 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,681
Number of Sequences: 438
Number of extensions: 4429
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)