Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j20r
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical pr...    51   7e-07
Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical pr...    44   1e-04
Z80223-8|CAN99671.1|  177|Caenorhabditis elegans Hypothetical pr...    36   0.036
U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase ...    29   2.3  
U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase ...    29   2.3  
Z30662-5|CAA83134.1|  363|Caenorhabditis elegans Hypothetical pr...    28   5.4  

>Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical
           protein F26D10.9a protein.
          Length = 613

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 13/193 (6%)
 Frame = -2

Query: 670 TANWVVGNHDNSRMATRYGASLVDGINMLVLLLPGVAVTYMGEEIGLEDGYVSWEDTVDP 491
           T +W   N + SR+A+R+ ++    ++ L L LPG    Y G+E GL+D           
Sbjct: 387 TPHWQFSNSEASRLASRFESATAHLLSFLQLTLPGANSVYYGQEYGLKD----------- 435

Query: 490 SGCNTNDPIKYVESSRDPERTPFHWNP--EKNAGFSTAD-KTWLPMAEG-YETLNVEVQK 323
              + N   K        +     W P  + + GFS  D   + P ++   E  N   Q 
Sbjct: 436 -AMSKNGEFK--------QMGVMQWYPAGKDHHGFSGNDAPIFFPESDDKLELDNYNTQF 486

Query: 322 ASERSHLKVYKALSDLRQ-ENTFRYGR-YESLALNQDIFVFKRWLNDV-------IYLVV 170
            +E S LK+Y+ L+ LRQ +     G       +N+D+ +F R++  V        ++V 
Sbjct: 487 ETENSALKIYRKLAKLRQRDEALIVGETVRDELINEDVILFSRYVQAVNNTATGSTFIVA 546

Query: 169 VNMRDVEHNIDLT 131
           +N  D E  ID +
Sbjct: 547 LNFGDKEQKIDFS 559


>Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical
           protein C38C6.2 protein.
          Length = 647

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
 Frame = -2

Query: 664 NWVVGNHDNSRMATRYGASLVDGINMLV-LLLPGVAVTYMGEEIGLEDGYVSWEDTVDPS 488
           +W  G+ D +R+A+R G+     + M++ ++LPG    Y GEEIG+ +            
Sbjct: 432 HWRFGSPDLARIASRVGSRPHAQLLMVLQMILPGTNNIYYGEEIGMRN------------ 479

Query: 487 GCNTNDPIKYVESSRDPERTPFHWNPEKNAGFSTADKTWLPMAEGYETLNVEVQKASERS 308
               ND      S   P++    W+   N GF++A    +P       +N + Q A  +S
Sbjct: 480 --LAND------SRVPPQKGAMQWDDSLNGGFTSAISPPVPSNIDVANINWKRQYAEPQS 531

Query: 307 HLKVYKALSDLRQ 269
            LK++  L+ LRQ
Sbjct: 532 TLKIFAKLAKLRQ 544


>Z80223-8|CAN99671.1|  177|Caenorhabditis elegans Hypothetical
           protein F26D10.9b protein.
          Length = 177

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 13/109 (11%)
 Frame = -2

Query: 418 WNP--EKNAGFSTADKT-WLPMAEG-YETLNVEVQKASERSHLKVYKALSDLRQ-ENTFR 254
           W P  + + GFS  D   + P ++   E  N   Q  +E S LK+Y+ L+ LRQ +    
Sbjct: 15  WYPAGKDHHGFSGNDAPIFFPESDDKLELDNYNTQFETENSALKIYRKLAKLRQRDEALI 74

Query: 253 YGR-YESLALNQDIFVFKRWLNDV-------IYLVVVNMRDVEHNIDLT 131
            G       +N+D+ +F R++  V        ++V +N  D E  ID +
Sbjct: 75  VGETVRDELINEDVILFSRYVQAVNNTATGSTFIVALNFGDKEQKIDFS 123


>U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase C2
           B isoform protein.
          Length = 682

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 535 GLEDGYVSWEDTVDPSGCNTNDPIKYVESSRDPE 434
           GL D YV W+   + SGC +    K + ++ +P+
Sbjct: 192 GLSDPYVKWKLIPEDSGCKSKQKTKTLRATLNPQ 225


>U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase C2
           A isoform protein.
          Length = 680

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 535 GLEDGYVSWEDTVDPSGCNTNDPIKYVESSRDPE 434
           GL D YV W+   + SGC +    K + ++ +P+
Sbjct: 192 GLSDPYVKWKLIPEDSGCKSKQKTKTLRATLNPQ 225


>Z30662-5|CAA83134.1|  363|Caenorhabditis elegans Hypothetical
           protein T16H12.8 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 449 RFDIFYWVVGITSRWVNCVFPANIAVF 529
           R  +F  ++ IT  W N VFP  +AVF
Sbjct: 104 RIMVFIGLIEITEIWGNSVFPGFVAVF 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,403,748
Number of Sequences: 27780
Number of extensions: 356853
Number of successful extensions: 939
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)