Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j20r
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52490.1 68418.m06512 fibrillarin, putative similar to fibril...    29   2.9  
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ...    29   2.9  
At1g20610.1 68414.m02575 cyclin, putative similar to G2/mitotic-...    29   3.8  
At2g07770.1 68415.m01005 hypothetical protein low similarity to ...    28   6.6  
At2g05250.1 68415.m00553 DNAJ heat shock N-terminal domain-conta...    28   6.6  
At2g05230.1 68415.m00551 DNAJ heat shock N-terminal domain-conta...    28   6.6  
At1g53520.1 68414.m06070 chalcone-flavanone isomerase-related lo...    28   6.6  

>At5g52490.1 68418.m06512 fibrillarin, putative similar to
           fibrillarin from {Xenopus laevis} SP|P22232, {Mus
           musculus} SP|P35550, {Homo sapiens} SP|P22087
          Length = 292

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = -2

Query: 670 TANWVVGNHDNSRMATRYGASLVDGINMLVLLLPGVAVTYMGEEIGLEDGYVSWEDTVDP 491
           T  + V N   S++A     ++  G++  + + PGV V Y+G   G    +VS  D V P
Sbjct: 105 TVEYRVWNPHRSKLAD----AITTGVDN-IWIKPGVKVLYLGASSGYTVSHVS--DIVGP 157

Query: 490 SGC 482
            GC
Sbjct: 158 EGC 160


>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
           identical to ubiquitin-specific protease 21 GI:11993482
           [Arabidopsis thaliana]
          Length = 732

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/78 (23%), Positives = 30/78 (38%)
 Frame = -2

Query: 469 PIKYVESSRDPERTPFHWNPEKNAGFSTADKTWLPMAEGYETLNVEVQKASERSHLKVYK 290
           P K   SS  P     ++NPE+N   +  + +  P  +       ++   S  +HL++  
Sbjct: 56  PAKPDGSSSSPPDKTLNFNPEENRDVNPDESSSSPSDKTLIAPPAQISPVSNNNHLRITN 115

Query: 289 ALSDLRQENTFRYGRYES 236
                      RY  YES
Sbjct: 116 TSDSYLYRPPRRYIEYES 133


>At1g20610.1 68414.m02575 cyclin, putative similar to
           G2/mitotic-specific cyclins (B-like cyclin) from
           {Medicago varia} SP|P46278, SP|P46277; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain
          Length = 429

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -2

Query: 559 VTYMGEEIGLEDGYVSWEDTVDPSGCNTNDPIKYVESSRDPERTPFHWNPEK 404
           +  M +EI +ED     E  +D   C+ N+P+  VE   D     F+ N EK
Sbjct: 141 IEQMEKEIEMEDADKEEEPVIDIDACDKNNPLAAVEYIHDMH--TFYKNFEK 190


>At2g07770.1 68415.m01005 hypothetical protein low similarity to KED
           [Nicotiana tabacum] GI:8096269; contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 518

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -2

Query: 349 ETLNVEVQKASERSHLKVYKALSDLRQENTFRYGRYESLALNQDIFVFKRWLNDVI 182
           +T+N EV  AS      + +A++DL    TF +GR+      +DIF   +  N+V+
Sbjct: 19  QTINDEVVVASAAEKFFL-RAVADLELCKTFPWGRFAFEENVKDIFYLIKKCNEVV 73


>At2g05250.1 68415.m00553 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 457 VESSRDPERTPFHWNPEKNAGFSTADKTWLPMAEGY 350
           VE+   P   PFH+ P  +A  S A  +  P + GY
Sbjct: 206 VETGPAPVSAPFHYTPPSHAPPSHAPPSHAPPSNGY 241


>At2g05230.1 68415.m00551 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 457 VESSRDPERTPFHWNPEKNAGFSTADKTWLPMAEGY 350
           VE+   P   PFH+ P  +A  S A  +  P + GY
Sbjct: 206 VETGPAPVSAPFHYTPPSHAPPSHAPPSHAPPSNGY 241


>At1g53520.1 68414.m06070 chalcone-flavanone isomerase-related low
           similarity to GI:499036 (Vitis vinifera)
          Length = 287

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -2

Query: 265 NTFRYGRYESLALNQDIFVFKRWLNDVIYLVVVNMRDVEHNIDLTYFENVSGNVAVSIRS 86
           +TFR G +++  LN+   +   W+N    LV V+   +  N+D T     SGNV  ++  
Sbjct: 207 STFR-GIFQNRPLNKGSVILLTWINTSNMLVSVSSGGLPTNVDATI---ESGNVTSALFD 262

Query: 85  V 83
           V
Sbjct: 263 V 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,651,908
Number of Sequences: 28952
Number of extensions: 334853
Number of successful extensions: 891
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)