Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10j20f
(593 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.) 147 7e-36
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 86 2e-17
SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_56875| Best HMM Match : LON (HMM E-Value=0) 30 1.6
SB_40706| Best HMM Match : Extensin_2 (HMM E-Value=7.9) 29 3.7
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_10756| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 147 bits (356), Expect = 7e-36
Identities = 68/134 (50%), Positives = 95/134 (70%), Gaps = 1/134 (0%)
Frame = +1
Query: 190 DSDGDGIGDLNGITSKLEYIKELGVGAVWLSPIFKSPMVDFGYDIANFYEIHHEYGTMED 369
DS+GDG GDL+GI S+L+Y+ LGV ++LSPIFKSPMVD GYD+++F +++ +GTMED
Sbjct: 41 DSNGDGNGDLSGIRSRLDYLDYLGVKIIYLSPIFKSPMVDNGYDVSDFMDVNPMFGTMED 100
Query: 370 FEALLKKANELDIKVVLDLVPNHTSNESVWFQEA-LNGNEKYYNYFVWEDGIIDENGNRQ 546
FE+LL+ + +K++LD VPNHTS++ WF E+ N + +++W D D
Sbjct: 101 FESLLQDIHSRGMKLLLDFVPNHTSDQHDWFLESRSNRHNPRREWYIWRDAASDGT---- 156
Query: 547 PPNNWLSHFRGSAW 588
PPNNWLS F GSAW
Sbjct: 157 PPNNWLSVFGGSAW 170
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 86.2 bits (204), Expect = 2e-17
Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 1/182 (0%)
Frame = +1
Query: 49 ILLTTMKTVCLLSLLFVACSGIIIKNGEVQDWWETSILYQIYPRSFADSDGDGIGDLNGI 228
++L + ++ ++ C+ +++ + + W E ++Y+I + F + L GI
Sbjct: 619 VILAMIVAAVVIIIVAPKCAKAKVRDMD-KSWLENEVVYKISAQQFNKN-------LTGI 670
Query: 229 TSKLEYIKELGVGAVWLSPIFKSPMVDFGYDIANFYEIHHEYGTMEDFEALLKKANELDI 408
KL Y++ LGV + + +F + ++++ G MEDF+ LLKKA++ +
Sbjct: 671 IDKLGYLENLGVKVLSIGAVFSEE---------DLQDVNNALGKMEDFQNLLKKAHDRKM 721
Query: 409 KVVLDLVPNHTSNESVWFQE-ALNGNEKYYNYFVWEDGIIDENGNRQPPNNWLSHFRGSA 585
+V++D VPNHTS ++ WF+E ++N N++VW D NNW S GSA
Sbjct: 722 RVIVDFVPNHTSKKNKWFEESSVNKTNSKRNWYVWRDS----------ANNWPSMNGGSA 771
Query: 586 WE 591
WE
Sbjct: 772 WE 773
>SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 769
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 310 FGYDIANFYEIHHEYGTMEDFEALLKKANELDIKVVLDLVPNHTSNESVWFQEALNGNEK 489
FGY + +F+ YGT ++ L+ A+ I V+LD+V +H + + +G E
Sbjct: 361 FGYQVTSFFAASSRYGTPDELRLLIDTAHSYGIVVLLDIVHSHAAKNVMDGLNQFDGTEG 420
Query: 490 YY 495
Y
Sbjct: 421 CY 422
>SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1329
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Frame = +1
Query: 208 IGDLNGITSKLEYIKELGVGAVWLSPIFKSPMVDFGYDIANFYEIHHEY--------GTM 363
+G L+ +++L+ ++ G + +PI + Y I + +++ + T
Sbjct: 411 LGPLSQWSARLQISRDSGYNVIHFTPISELGRSHSSYSIVDQLKLNCRFDEPGSKKGATF 470
Query: 364 EDFEALLKKAN-ELDIKVVLDLVPNHTSNESVW 459
+ + +L K E + ++D+V NHT+NE+ W
Sbjct: 471 PEVKKILNKMKTEWKMLSIVDIVLNHTANETEW 503
>SB_56875| Best HMM Match : LON (HMM E-Value=0)
Length = 925
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 277 LSPIFKSPMVDFGYDIANFYEIHHEYGTMEDFEALLKKANELDIKVVLDLV 429
L P+ ++P+ + Y+I M DF L K+ N+++ K ++DLV
Sbjct: 140 LIPVHRNPVFPRFVKMLEVYQISEFRKNMNDFGPLGKQVNQINDKSLMDLV 190
>SB_40706| Best HMM Match : Extensin_2 (HMM E-Value=7.9)
Length = 301
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = -1
Query: 263 TPNSLIYSNFEVIPFKSPIPSPSLSAKDLG*IWYKIEVSHQS*TSPFFIMIPLHATKSKD 84
T + L+Y + +PF S IP +L KD Y + + S PF IP+ KD
Sbjct: 216 THHYLLYQGYPSLPFISRIPITTLYIKDTH--QYPLYQGYPS--LPFISRIPITTLYIKD 271
Query: 83 SKH 75
+ H
Sbjct: 272 THH 274
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Frame = -3
Query: 561 PIIRWLPI------SIFVYDSVFPNEIIVIFFVAI 475
P++R LPI S+ +YD+ FP E+ +F V I
Sbjct: 969 PVVRELPITNTFSFSVIIYDATFPPEVQNLFSVII 1003
>SB_10756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 713
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 414 CFGSCTKSYIKRKCLVPRSSQWQRK 488
CFGSC+K++IK + L+ ++ QRK
Sbjct: 108 CFGSCSKAFIKLE-LLDNVTEEQRK 131
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,823,332
Number of Sequences: 59808
Number of extensions: 401959
Number of successful extensions: 1474
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1465
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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