Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10j19r
(752 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl... 32 0.47
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl... 32 0.47
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative... 30 1.4
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative... 30 1.4
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative... 30 1.4
At4g16080.1 68417.m02438 hypothetical protein contains Pfam prof... 29 4.4
At5g25170.1 68418.m02984 expressed protein 28 5.8
At2g01050.1 68415.m00010 hypothetical protein 28 5.8
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi... 28 5.8
At4g11530.1 68417.m01850 protein kinase family protein contains ... 28 7.7
At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like... 28 7.7
>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 31.9 bits (69), Expect = 0.47
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +2
Query: 332 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 436
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 31.9 bits (69), Expect = 0.47
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +2
Query: 332 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 436
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 577 LKGSGSW*EQYQRTVGTIDSRWV 645
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 577 LKGSGSW*EQYQRTVGTIDSRWV 645
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 577 LKGSGSW*EQYQRTVGTIDSRWV 645
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At4g16080.1 68417.m02438 hypothetical protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 379
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 213 PLYCSLQFSLLVTMSSSLWRLPSDTL 290
P Y L FS+LVT +SLW L D +
Sbjct: 212 PQYHELNFSILVTGHTSLWSLLQDNV 237
>At5g25170.1 68418.m02984 expressed protein
Length = 218
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 188 QILRRFGPGWWPRLRQY*LGCPCLLP 111
Q+ RR P W RL ++ L C C+LP
Sbjct: 127 QLTRRSIPSWVNRLARFGLFCNCVLP 152
>At2g01050.1 68415.m00010 hypothetical protein
Length = 515
Score = 28.3 bits (60), Expect = 5.8
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = +2
Query: 206 IMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTL-----GYYDTLLDNS 370
+MT++ P FF+ FEL E Y AAL G P + L +D L D+
Sbjct: 108 VMTVMDLPRQFFM--IRFELEE---EYMAALTGG-PWRVLGNYLLVQDWSSRFDPLRDDI 161
Query: 371 TLLDVWAEVDGMCYSYDAHILVVILLREFG 460
VW + + Y+Y L++ + R G
Sbjct: 162 VTTPVWVRLSNIPYNYYHRCLLMEIARGLG 191
>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 656
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 142 NTDLGAPAFFQNALVGIVSFGKSNANDIYPVVLTSIS 32
N +G AF NA + FG +N IYP +T +S
Sbjct: 479 NAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVS 515
>At4g11530.1 68417.m01850 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 931
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = -2
Query: 640 ILNQWFQQCAGIVLTNYHYLSTATCFHGEF-----YDPAYRRIIA 521
+LN F L + Y+ST TCF+G F YD RRI++
Sbjct: 2 MLNTLFLPIFLFFLITFDYVSTQTCFNGYFKPNGTYDLNRRRILS 46
>At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like
protein kinase GB:CAB16796 GI:4006878 from [Arabidopsis
thaliana]
Length = 359
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +2
Query: 248 HNEF-ELVEVAVRYTAAL----NGSSPSEQINKNTLGYYDTLLDNSTLLDVWA--EVDGM 406
HN F L EV+ +A L S + Q+N G+ + D D+W DG
Sbjct: 84 HNSFARLGEVSRTGSAILAPTNQQDSITSQLNNGVRGFMLDMYDFQN--DIWLCHSFDGT 141
Query: 407 CYSYDAHILVVILLREF 457
C+++ A + +LREF
Sbjct: 142 CFNFTAFQPAINILREF 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,740,175
Number of Sequences: 28952
Number of extensions: 409137
Number of successful extensions: 1065
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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