Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10j17f
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 123 1e-28
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656... 33 0.13
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 30 1.6
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 29 2.2
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 29 3.8
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 29 3.8
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 28 5.0
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 5.0
03_06_0724 - 35757228-35757323,35757837-35757893,35757983-357580... 28 6.6
12_02_0844 - 23609783-23609926,23610014-23610331,23610771-236109... 27 8.7
06_01_1128 + 9300144-9300273,9300340-9300472,9300585-9300656,930... 27 8.7
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336... 27 8.7
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 123 bits (296), Expect = 1e-28
Identities = 71/174 (40%), Positives = 103/174 (59%), Gaps = 3/174 (1%)
Frame = +3
Query: 78 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 248
M +Y+D++TGDE+ SD++ + ++ +++EV G+ V + D+ I G NPSAE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59
Query: 249 TDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMN 428
D VDIV RL E F DKK + ++K Y+K L AKL+ ++ E FK N+
Sbjct: 60 VDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIE 115
Query: 429 KVMKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 590
K +LG+ K+LQFF GESM DG + Y+ DG P ++F HGL+E K
Sbjct: 116 GATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK--DGATDPTFLYFSHGLKEVK 167
>01_05_0142 -
18564697-18564792,18564824-18564928,18565606-18565678,
18566262-18567637
Length = 549
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = -1
Query: 521 FHHGNHAITIHRLPSKEL----KFLKPAEDVFHYFVHVCFKYFNLVRRL 387
FHH H ++ PSK+L ++L+ FH F ++C++Y + R+L
Sbjct: 245 FHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 318 GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESM 491
G +K TL L++Y+ +V A L+ +Q+E FK +NKV K L+ F+ + M
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEM 1194
Query: 492 D 494
+
Sbjct: 1195 E 1195
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 29.5 bits (63), Expect = 2.2
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +3
Query: 114 MFSDTYKMKLVDEVI-YEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLN 290
+FS VDE I +E+ + G+I ++GF G D+AVE ++ V
Sbjct: 101 LFSGAETTDEVDEYIEFEINVGCIGGGGGNITVDGFRGGGSGGGRGGDAAVEIEINEV-- 158
Query: 291 HRLVETYAFGDKKS--YTLYLKD 353
R+ E K S Y L L D
Sbjct: 159 -RVSEVRGIAGKASGTYVLVLLD 180
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +3
Query: 291 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 470
H L+ A D S +L ++++ V +E+A Q+EV K + K+I EL
Sbjct: 177 HELIRAGAENDALSRSLEEREHLMMKVGGEKEQAESQIEVLKGTIQSGEKEISSLKYELH 236
Query: 471 FFTGE 485
+ E
Sbjct: 237 VLSKE 241
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +3
Query: 183 TRAQGDIQIEGFNPSAEEADEGTDSAVESGVD--IVLNHRLVETYAFGD 323
TR+ +Q++GF PSA ++ +G+ + V S + IV +L +T G+
Sbjct: 827 TRSSDKVQLKGFVPSAPKSSQGSRTYVSSAKNRFIVPKEQLQKTSTEGN 875
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 201 IQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKK 329
+ I N S EE +E ++A VD+ LN +E +G+KK
Sbjct: 711 VSINYENASLEEVEEA-EAAARYAVDVHLNRPTLELKRYGEKK 752
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 393 APSLPILLLIFSYSL*GTMCRISCHRRRMFRLA 295
APS + + SYSL GT + RR +F LA
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLA 719
>03_06_0724 -
35757228-35757323,35757837-35757893,35757983-35758075,
35758271-35758336,35758444-35758653,35758750-35759022,
35759112-35759251,35759330-35759471
Length = 358
Score = 27.9 bits (59), Expect = 6.6
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = +3
Query: 144 VDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 323
VD ++ + T V + D + +G A+ + G + + + ++ R E D
Sbjct: 134 VDLILEQTTVGTVVKIADDEE-DGEGNGADGSSTGGNDDLFGLISVLNLGRYSEHRCMKD 192
Query: 324 KKSYTLYL---KDYMKKLVAKLEEKAPD 398
K Y L + KD KKL L +KAPD
Sbjct: 193 LKDYLLAVCGDKDTKKKLKQMLGDKAPD 220
>12_02_0844 -
23609783-23609926,23610014-23610331,23610771-23610926,
23611068-23611318,23611384-23611530,23612450-23612501,
23612628-23612763,23613507-23613538
Length = 411
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 342 YLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGR 455
YL+D ++ KL EK D E+ + + + M ++LG+
Sbjct: 253 YLEDSKNEVYMKLAEKRVDCQELSEADFEQAMLEVLGK 290
>06_01_1128 +
9300144-9300273,9300340-9300472,9300585-9300656,
9300783-9300926,9301453-9301524,9301584-9301677,
9301782-9301928
Length = 263
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 25 EKPFFRFLLFLIASNPS 75
E PFF FLL L++S+PS
Sbjct: 2 EAPFFFFLLLLVSSSPS 18
>01_05_0078 +
17931998-17932062,17933320-17933416,17933506-17933601,
17933957-17933988,17935143-17935595,17935831-17935975,
17936058-17936159,17937798-17937890,17939448-17939489,
17940092-17940202,17940446-17940517,17940596-17940714,
17940981-17941044,17941133-17942782
Length = 1046
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 574 PCL-KNIMIGICVPSKSLYSIMATMPSQSIDSPV 476
PCL K+ GI P+K ++ TMPS S + +
Sbjct: 200 PCLLKDASTGITKPAKEQGKLLVTMPSSSTSTKI 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,212,745
Number of Sequences: 37544
Number of extensions: 295171
Number of successful extensions: 766
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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