Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10j16r
(364 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc... 52 4e-08
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc... 52 4e-08
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 29 0.29
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 29 0.29
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 0.68
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 27 0.90
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 27 0.90
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 26 1.6
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 25 3.6
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 24 6.3
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 24 6.3
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 6.3
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 24 6.3
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 24 8.3
>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 88
Score = 51.6 bits (118), Expect = 4e-08
Identities = 22/50 (44%), Positives = 38/50 (76%)
Frame = -1
Query: 205 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIK 56
+FDK +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I+
Sbjct: 21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQ 70
>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 51.6 bits (118), Expect = 4e-08
Identities = 22/50 (44%), Positives = 38/50 (76%)
Frame = -1
Query: 205 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIK 56
+FDK +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I+
Sbjct: 21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQ 70
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 28.7 bits (61), Expect = 0.29
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 81 SMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFL 260
S+SA FNL+ GV ++ G S +F+ + + + W F + P+D FL
Sbjct: 139 SLSADTIGRRWAFNLTFLFTGVFAVIAGASP-NFASICVFDALWSFGVGGNLPVDSAIFL 197
Query: 261 -ALP 269
ALP
Sbjct: 198 EALP 201
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 28.7 bits (61), Expect = 0.29
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 184 HMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 297
+M YQ TP HE WT SS L H + PS+ +
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.5 bits (58), Expect = 0.68
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 177 SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 275
SF Y L NN++L +S + ++ F++ PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 27.1 bits (57), Expect = 0.90
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 303 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 205
K HR DP+ P RR GP + V + +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 27.1 bits (57), Expect = 0.90
Identities = 17/75 (22%), Positives = 29/75 (38%)
Frame = +3
Query: 39 GVGLPXLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLF 218
GVG L+ PFSL+S + + P + ++ Y G ++ Y
Sbjct: 310 GVGWSILLLPFSLTSYAKNGWKNPSMIAMMVVGGVILIAYSGYEMFIAPYPSCPRRVMNR 369
Query: 219 NLSRTFPLDHFFFLA 263
+D F++LA
Sbjct: 370 TFITAVIIDFFYYLA 384
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 26.2 bits (55), Expect = 1.6
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +3
Query: 69 FSLSSMSALLAREPRTFN--LSDTTAGVISLYCGTSLYSFSYVGLSNNT---WLFNLSRT 233
F S M+ + + FN LSD VIS G + Y F V LS+ T W N +
Sbjct: 203 FYSSIMNEVAEKANAGFNISLSDYWGRVISRTLGDTTYGFPNVSLSSITSQEWYRNANFP 262
Query: 234 FPLDHF 251
+P+ F
Sbjct: 263 YPIITF 268
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 25.0 bits (52), Expect = 3.6
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 144 VISLYCGTSLYSFSYV-GLSNNTWLFNLSRTFPLDHFFFLALPPP 275
V+ + C +L F ++ G+ N T P +F+ L PPP
Sbjct: 37 VVVIICIAALIFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 24.2 bits (50), Expect = 6.3
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -1
Query: 211 QVLFDKPTYEKLYKEVPQYKLITPAVVSE----RLKVRGSLARRALIELREKGLIKXGSP 44
Q++ D P ++ L+ +P L P + +L + GS++R +++ +G G
Sbjct: 543 QLMSDAPAHQ-LFVLLPPVDLKNPKLPDPICVIQLALEGSISRESIMNSLSRGQRAGGDL 601
Query: 43 TPW 35
PW
Sbjct: 602 IPW 604
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 6.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 198 SNNTWLFNLSRTFPLDHFFFLAL 266
S N+W+F L TF F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 6.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 256 SWLCRHRILPSSSVFFEAVW 315
+WL + ++PSSS F + W
Sbjct: 131 AWLEKQELVPSSSNFLNSFW 150
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 24.2 bits (50), Expect = 6.3
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 78 SSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT--WLFNLSRTFP 239
S+ S L+ EP+TF+ S T + IS SL LS++T L + S T P
Sbjct: 946 SASSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTTSGLTSSSSTIP 1001
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 23.8 bits (49), Expect = 8.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 190 TYEKLYKEVPQYKLITPAVVS 128
TY+K+Y E P K++ + S
Sbjct: 96 TYKKIYNEYPPTKILVQEIAS 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,516,908
Number of Sequences: 5004
Number of extensions: 30206
Number of successful extensions: 120
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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