Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j16r
         (364 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)              105   1e-23
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045)                 28   2.6  
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    27   3.4  
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)                 27   6.0  
SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19)                    26   8.0  
SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)            26   8.0  
SB_58990| Best HMM Match : SH3_1 (HMM E-Value=1.7e-14)                 26   8.0  

>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
          Length = 115

 Score =  105 bits (251), Expect = 1e-23
 Identities = 55/96 (57%), Positives = 62/96 (64%)
 Frame = -1

Query: 343 PPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKEV 164
           PPKKD K  AK+PQ                           LNN VLFDK TY+KLYKEV
Sbjct: 1   PPKKDPKKDAKKPQKAQKPAGSGGGKAKKKKWSKGKVRDK-LNNLVLFDKATYDKLYKEV 59

Query: 163 PQYKLITPAVVSERLKVRGSLARRALIELREKGLIK 56
           P Y+LITP+VVSERLK+RGSLARRAL+EL+ KGLIK
Sbjct: 60  PSYRLITPSVVSERLKIRGSLARRALLELQSKGLIK 95


>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1442

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 151  LITPAVVSERLKVRGSLARRALIELREKGL-IKXGSPTPWAGDLPRVRPR 5
            L+   +V  ++ +     RR ++++ E+ L I    P P A  LPR RPR
Sbjct: 1344 LVQIQLVKTQIPLPRKPPRRRVLDIEEEPLRIAANEPQPAADPLPRDRPR 1393


>SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045)
          Length = 191

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 361 FSNSKMPPKKDAKASAKQPQ 302
           F+ SKMP KK AKA+  QP+
Sbjct: 47  FAISKMPSKKGAKAAEAQPE 66


>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 165 TSLYSFSYVGLSNNTWLFNLSRTFPLDH 248
           +SL+     G+SN+ WL N S T P++H
Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277


>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 312 NSLKKHRRRRKDPVAAKPRRRSGPK 238
           N   KH  ++K PV   P+R  GPK
Sbjct: 304 NDKHKHNSKQKTPVVYFPKRPYGPK 328


>SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)
          Length = 683

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 210 WLFNLSRTFPLDHFFFLALPPPDPSFFFC--VF*GCLAEAFASF 335
           WL   + TFPL  +  + + P DP  ++C  +F G    +F S+
Sbjct: 154 WLAATAITFPLFMYSKMVMSPFDPDTYWCFVLFPGDSLSSFPSY 197


>SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19)
          Length = 486

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 350 KDAAQEGREGFGQTASKNTEEE-GRIRWRQSQEE 252
           K+ ++  R      AS ++E+E  RIRWRQ ++E
Sbjct: 245 KEGSRSRRRSPDPYASSDSEDERDRIRWRQLEKE 278


>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1453

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 315 PNSLKKHRRRRKDPVAAKPRRRSGPKEK 232
           PN+LK+ +RR  +    KP  RS  K +
Sbjct: 67  PNALKREKRRTTNSANRKPANRSPSKRE 94


>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
          Length = 1091

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 12  RTRGRSPAHGVGL-PXLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYCGTS 170
           +  GR P  GV + P   R  SLSS  +  A  PR+  ++   A    +Y  T+
Sbjct: 616 KLNGRPPNMGVQISPSNTRTDSLSSQDSASAESPRSRQIAAEEAAAALIYNHTA 669


>SB_58990| Best HMM Match : SH3_1 (HMM E-Value=1.7e-14)
          Length = 167

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +3

Query: 72  SLSSMSALLAREPRTFNLSDTTAGVISLYCGT-SLYSFSYVGLSNNTWLFNLSRTFPLDH 248
           +L+   +L +RE     L +  +  I  +    S++  +Y GL  N W       +PL H
Sbjct: 100 TLTKNISLFSREIEVTTLKEHISCAIKCFVIVMSMFLPNYAGLRRNLWFTRKKPNYPLPH 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,614,836
Number of Sequences: 59808
Number of extensions: 239845
Number of successful extensions: 772
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)