Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10j16r
(364 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B) 75 1e-14
At4g34555.1 68417.m04910 40S ribosomal protein S25, putative 75 2e-14
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo... 74 2e-14
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 72 1e-13
At1g14500.1 68414.m01719 ankyrin repeat family protein contains ... 29 1.2
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri... 28 2.1
At1g79610.1 68414.m09282 sodium proton exchanger, putative (NHX6... 27 2.8
At5g16810.1 68418.m01969 expressed protein 27 3.7
At4g30140.1 68417.m04285 GDSL-motif lipase/hydrolase family prot... 27 4.9
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim... 27 4.9
At1g24706.1 68414.m03104 expressed protein 27 4.9
At5g64950.1 68418.m08170 mitochondrial transcription termination... 26 6.5
At1g48180.1 68414.m05378 expressed protein ; expression supporte... 26 6.5
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 26 8.6
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 26 8.6
At4g36670.1 68417.m05203 mannitol transporter, putative similar ... 26 8.6
At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter c... 26 8.6
At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing pr... 26 8.6
>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
Length = 108
Score = 74.9 bits (176), Expect = 1e-14
Identities = 32/55 (58%), Positives = 46/55 (83%)
Frame = -1
Query: 220 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIK 56
+NN VLFD+ TY+KL E P++KLITP+++S+R+++ GSLARRA+ EL KGLI+
Sbjct: 37 VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIR 91
>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
Length = 108
Score = 74.5 bits (175), Expect = 2e-14
Identities = 32/55 (58%), Positives = 45/55 (81%)
Frame = -1
Query: 220 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIK 56
+NN VLFD+ TY+KL E P++KLITP+++S+RL++ GSLARRA+ EL KG I+
Sbjct: 37 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIR 91
>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
ribosomal protein S25, Lycopersicon esculentum,
PIR2:S40089
Length = 108
Score = 74.1 bits (174), Expect = 2e-14
Identities = 31/55 (56%), Positives = 46/55 (83%)
Frame = -1
Query: 220 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIK 56
+NN VLFD+ TY+KL E P++KLITP+++S+R+++ GSLARRA+ EL KG+I+
Sbjct: 37 VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIR 91
>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)
Length = 125
Score = 71.7 bits (168), Expect = 1e-13
Identities = 30/55 (54%), Positives = 45/55 (81%)
Frame = -1
Query: 220 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIK 56
+NN VLFD+ TY+KL E P++KLITP+++S+RL++ GSLAR+A+ +L KG I+
Sbjct: 53 VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIR 107
>At1g14500.1 68414.m01719 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 436
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 156 YCGTSLYSFSYVGLSN--NTWLFNLSRTFPLDHFFFLALPPPDPSFFFC 296
+C LY+F + + + TW F + + + + +A+ P+P F C
Sbjct: 342 FCCALLYTFCLLPIGSLFTTWFFWIGASLGVSYALAMAIISPNPLLFLC 390
>At2g17250.1 68415.m01992 expressed protein weak similarity to
Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
[Saccharomyces cerevisiae]
Length = 577
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/47 (27%), Positives = 29/47 (61%)
Frame = -1
Query: 217 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIEL 77
+++ + +KPT +K E L++PA +S+R+K++ + A + + L
Sbjct: 245 SDESISEKPTDKKKKTEKGDSTLLSPATISKRMKLKFTKAWISFLRL 291
>At1g79610.1 68414.m09282 sodium proton exchanger, putative (NHX6)
identical to Na+/H+ exchanger 6 [Arabidopsis thaliana]
gi|19919848|gb|AAM08407 (Plant J. (2002) In press);
contains similarity to Na+/H+ antiporter GI:1655701 from
[Xenopus laevis]; contains non-consensus AT/AC splice
sites; Member of The Monovalent Cation:Proton Antiporter
(CPA1) Family, PMID:11500563
Length = 535
Score = 27.5 bits (58), Expect = 2.8
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +3
Query: 33 AHGVGLPXLMRPFSLSSMSALLAREPRTFNLSDTTAGV-ISLYCGTSLYSFSYVGLSNNT 209
A GVG+ + LS + + R + + L + +A + I L G L + S S T
Sbjct: 23 AAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLIVG-GLANISNTETSIRT 81
Query: 210 WLFNLSRTFPLDHFFFLALPPP 275
W FN D FFFL L PP
Sbjct: 82 W-FNFH-----DEFFFLFLLPP 97
>At5g16810.1 68418.m01969 expressed protein
Length = 418
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 353 FKDAAQEGREGFGQTAS-KNTEEEGRIRWRQSQEEEVVQRK 234
F+D ++ + QTAS K T + W ++E++++R+
Sbjct: 181 FRDGGKDSAADYAQTASEKTTRARSQGVWNPYEKEQMIKRR 221
>At4g30140.1 68417.m04285 GDSL-motif lipase/hydrolase family protein
low similarity to family II lipases EXL3 GI:15054386,
EXL1 GI:15054382 from [Arabidopsis thaliana]; contains
Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase
Length = 348
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 99 REEHSSNLGKKVSSXQVVQHHGQVIYHA 16
REE S N+G+++S Q V +H I A
Sbjct: 118 REETSENMGERISLRQQVNNHFSAIITA 145
>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 595
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 182 LICGFIKQHLVVQLVTNFSFGPLLLLGFAAT 274
++CG + +H V++L F+ G L +GF T
Sbjct: 213 MLCGLLMRHEVLRLGAVFASGLLRAIGFLQT 243
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 219 NLSRTFPLDHFFFLALPPPDP 281
+L ++ P DHF LPPP P
Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582
>At5g64950.1 68418.m08170 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 391
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 78 SSMSALLAREPRTFNLSD 131
S +++LL R+PR FNLS+
Sbjct: 196 SQLASLLRRQPRIFNLSE 213
>At1g48180.1 68414.m05378 expressed protein ; expression supported
by MPSS
Length = 239
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 123 LSDTTAGVISLYCGTSLYSFSYVGL 197
L + + +YCGTS SYVGL
Sbjct: 149 LQQDASAITGIYCGTSGEPASYVGL 173
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 135 TAGVISLY-CGTSLYSFSYVG 194
T G I LY CG + Y FS++G
Sbjct: 25 TPGKIGLYVCGITAYDFSHIG 45
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +3
Query: 156 YCGTSLYSFSYVGLSNNTWLFNLSRTFPL--DHFFFLALPPPDPSF 287
Y T++ S + W FN + + DHFF LA P PSF
Sbjct: 566 YVATAVTSVHEMENGFTIWSFNGIMLYRILKDHFFQLAWRPRPPSF 611
>At4g36670.1 68417.m05203 mannitol transporter, putative similar to
mannitol transporter [Apium graveolens var. dulce]
GI:12004316; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 493
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 144 VISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPL 242
V+S+ S +F +GL TW+++ S FPL
Sbjct: 377 VLSIVAAYSFVAFFSIGLGPITWVYS-SEVFPL 408
>At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter
contains transmembrane domains; identical to
UDP-galactose/UDP-glucose transporter (GI:22651763)
[Arabidopsis thaliana] similar to UGTrel1 (GI:1669564)
[Rattus rattus]; identical to cDNA
UDP-galactose/UDP-glucose transporter GI:22651762
Length = 332
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 161 WDFLVQFLICGFIKQHLVVQLVTNF 235
WD L ++ ICG + Q+ + ++NF
Sbjct: 245 WDIL-KYCICGAVGQNFIFMTISNF 268
>At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 384
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 347 DAAQEGREGFGQTASKNTEEEGRIRWRQSQEEEVVQ-RKSS*QVE 216
+ + G+EG + A E+EG +++E EVV+ +K S +V+
Sbjct: 174 EKTEAGKEGQTEIAEAEKEKEGEKAEAENKEAEVVRDKKESMEVD 218
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,167,581
Number of Sequences: 28952
Number of extensions: 165930
Number of successful extensions: 547
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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