Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j15r
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    29   0.57 
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    28   1.3  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   3.0  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    27   3.0  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    26   4.0  
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   5.3  
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   5.3  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   5.3  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.3  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    26   5.3  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   9.3  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    25   9.3  

>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 51  RGRRHWNCSFQKTQCLP-THFGRRQGHPSQYYRSHGHHPGPNRRRICDQSRRDH 209
           +  +H+  S++ ++    +H+  +  H S+Y R+    PG N     DQS   H
Sbjct: 184 KNHKHYENSYRPSRSQNNSHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 512 PVVVSQVKYLMFTLPLTIPNSLRRITTRM*ASYE*HMPSTSAQISSRV 369
           P ++  V YL+ T+  T+P +L  I   M A+ +   PS  A  + R+
Sbjct: 288 PNILQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRI 335


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +2

Query: 275 PSDALPP*TVVPHPSRSTKIPWGITTPCWIIAPCWI 382
           PSDA    T VP  + S   PW  TTP     P W+
Sbjct: 21  PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -2

Query: 150 DYDNTDLGAPAFFQNALVGIVSFGKSNSNDAYPVVLTSISSFTEWILQN 4
           D  + +L       + +   +SF K  + D YP  +  +  FT+ ++QN
Sbjct: 102 DLTDVELSDKVIKASYIEDTISFSKPKTVDNYPEYIQHLPGFTKKVVQN 150


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 426 HPCRNSPQRIGDG*RQSEHKIFHLA--HYDGKIQR 524
           H C  +P+ I  G RQ E  ++H+A   +D KI R
Sbjct: 11  HLCMRNPKLIRIGLRQVESIVYHVAKPSHDDKIPR 45


>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 204 DHDPYTGSCSFLCWS 248
           DH+PYT S S +C S
Sbjct: 91  DHEPYTASLSHICHS 105


>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 204 DHDPYTGSCSFLCWS 248
           DH+PYT S S +C S
Sbjct: 91  DHEPYTASLSHICHS 105


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -2

Query: 210 HDRVVTDHKFCAGLVRDGGRDYDNTDLGAPAFFQNALVGI-VSFGKSNSNDAYPVVLTSI 34
           HD VVT  +  + L+ D       + L       NAL  + V FGK+ SND     L + 
Sbjct: 587 HDLVVTVERHVSTLLADSSSIVRRSLL-------NALAPLCVFFGKAKSNDLILSHLITY 639

Query: 33  SSFTEWILQ 7
            + T+W+L+
Sbjct: 640 LNDTDWMLR 648


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 586 LPFNXYLFPWRILRSCIPSHYRWIFP 509
           LP + + F W    +C P H  WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
 Frame = +3

Query: 105 HFGRRQGHPSQYY----RSHGHHPGPNRRRICDQSRRDHDP 215
           H+       S YY    R HG  P P RR +    RR  DP
Sbjct: 147 HYYHAGSESSAYYDSRSRLHGIQPPPKRRTLSPPPRRLADP 187


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 84  FGKSNSNDAYPVVLTSISSFTEWILQN 4
           FG S +N   PV L S  SFT +++++
Sbjct: 243 FGNSFANGLPPVFLNSSRSFTSYLVKS 269


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 596 PTTTTFQLXPVSMENSTILHTVALSLDLPVVVSQVKYLMFT--LPLTIPNSL 447
           P+  T  +       ++IL T+  SL   +VVS   Y +FT  LP T   S+
Sbjct: 89  PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLLPSTATGSV 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,746
Number of Sequences: 5004
Number of extensions: 67471
Number of successful extensions: 182
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)