Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10j15r
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 41 7e-04
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 38 0.006
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 31 0.53
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical pr... 31 0.93
AF106582-7|ABD94096.1| 806|Caenorhabditis elegans Hypothetical ... 31 0.93
AF106582-6|ABD94095.1| 834|Caenorhabditis elegans Hypothetical ... 31 0.93
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 30 1.2
U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical pr... 29 2.1
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 28 6.5
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 28 6.5
Z98866-11|CAB11564.2| 335|Caenorhabditis elegans Hypothetical p... 27 8.6
U62896-1|AAB17868.1| 335|Caenorhabditis elegans PIE-1 protein. 27 8.6
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 27 8.6
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 27 8.6
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 41.1 bits (92), Expect = 7e-04
Identities = 40/209 (19%), Positives = 80/209 (38%), Gaps = 8/209 (3%)
Frame = -2
Query: 615 CAGIVLTNYHYLSTXTCFHGEFYDPAYRRIIAGSSRRSEPG--EISYVHFAVNHPQFSEE 442
C +L H ++ CF + +Y ++ G +I Y+ +P + ++
Sbjct: 54 CGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLY-KD 112
Query: 441 NYDKDVSIVRVTH-AIHFGPNXXXXXXXXXXXXXXXXXXVDLLGWGTTVQGGSASDGNLH 265
+ D++I+ + + I F + GWG+ G L
Sbjct: 113 IFSHDIAILEIPYPGIEFNEYAQPICLPSKDFVYTPGRQCVVSGWGSM---GLRYAERLQ 169
Query: 264 KLELIVTNKENCRNQYKDHDRVVTDHKFCAGLVRDGGRDYDNTDLGAPAFFQN-----AL 100
+ + N+ +C N + + + + FCAG + +GG D D G P + L
Sbjct: 170 AALIPIINRFDCVNSSQIYSSM-SRSAFCAGYL-EGGIDSCQGDSGGPFACRREDGAFVL 227
Query: 99 VGIVSFGKSNSNDAYPVVLTSISSFTEWI 13
G++S+G + P + T ++ + WI
Sbjct: 228 AGVISWGDGCAQKKQPGIYTMVAPYLSWI 256
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 37.9 bits (84), Expect = 0.006
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Frame = -2
Query: 315 GWGTTVQGGSASDGNLHKLELIVTNKENCRNQYKDHDRVVTDHKFCAGLVRDGGRDYDNT 136
GWG+T++G S S L ++ + + + C + R+ CAG G D
Sbjct: 181 GWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAG-YSYGKIDSCQG 239
Query: 135 DLGAPAFFQN----ALVGIVSFGKSNSNDAYPVVLTSISSFTEWI 13
D G P L G+VS+G + P V ++ S + WI
Sbjct: 240 DSGGPLMCARDGHWELTGVVSWGIGCARPGMPGVYGNVHSASTWI 284
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 427 CEHRTSNTCHPLRPKYPAGCYYPTRCRNTPGYFC 326
C+ +N+C L P+ GC PT CRNT C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306
>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
protein ZC84.6 protein.
Length = 1474
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +3
Query: 54 GRRHWNCSFQKTQCLPTHFGRRQGHPSQYYRSHGHHPGPNRRRICDQSRRDHDPYTGSCS 233
G W C + C P G R PS R +H G ++ +R +DP +G CS
Sbjct: 311 GSTQWCCPTVASVCGPV--GGRPLDPSVNNRGTVYHSGVEKQGTATSTRFFYDPQSGKCS 368
>Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical
protein C30F2.1 protein.
Length = 307
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 403 CHPLRPKYPAGCYYPTRCRNTPG 335
C P+RPK P G P CR PG
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPG 124
>AF106582-7|ABD94096.1| 806|Caenorhabditis elegans Hypothetical
protein W05F2.4b protein.
Length = 806
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 84 KTQCLPTHFGRRQGHPSQYYRSHGHHPGPNRRR 182
K + PT FGR Q H +Q + + + PNR R
Sbjct: 390 KRRSFPTSFGRPQAHQAQQHHAPSDYEKPNRFR 422
>AF106582-6|ABD94095.1| 834|Caenorhabditis elegans Hypothetical
protein W05F2.4a protein.
Length = 834
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 84 KTQCLPTHFGRRQGHPSQYYRSHGHHPGPNRRR 182
K + PT FGR Q H +Q + + + PNR R
Sbjct: 418 KRRSFPTSFGRPQAHQAQQHHAPSDYEKPNRFR 450
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -1
Query: 427 CEHRTS--NT-CHPLRPKYPAGCYYPTRCRNTPGY 332
CE + NT C P+ K P C+ RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897
>U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical
protein R04E5.8b protein.
Length = 142
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 105 HFGRRQGHPSQYYRSHGHHPGPNRRRICDQSR-RDHD 212
H + H + + GHH GP R D++R R+HD
Sbjct: 57 HIAPARAHNRGQHHNRGHHHGPPRNHNQDRNRHRNHD 93
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 105 HFGRRQGHPSQYYRSHGHHPGPNRRRICDQSR-RDHD 212
H + H + + GHH GP R D++R R+HD
Sbjct: 901 HIAPARAHNRGQHHNRGHHHGPPRNHNQDRNRHRNHD 937
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 99 PTHFGRRQGHPSQYYRSHGHHPGPNRRRICDQSRRDH 209
P H +QG P Y HHP ++ DQ +R H
Sbjct: 463 PMHHQMQQGPPRMMYMHQQHHP---MHQVEDQMQRQH 496
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 99 PTHFGRRQGHPSQYYRSHGHHPGPNRRRICDQSRRDH 209
P H +QG P Y HHP ++ DQ +R H
Sbjct: 463 PMHHQMQQGPPRMMYMHQQHHP---MHQVEDQMQRQH 496
>Z98866-11|CAB11564.2| 335|Caenorhabditis elegans Hypothetical
protein Y49E10.14 protein.
Length = 335
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 126 HPSQYYRSHGHHPGPNRRRICDQSRRDHDPYTGSCSFL 239
H + R +H NRR+IC R + Y C F+
Sbjct: 170 HHDENRRPSNNHGSSNRRQICHNFERGNCRYGPRCRFI 207
>U62896-1|AAB17868.1| 335|Caenorhabditis elegans PIE-1 protein.
Length = 335
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 126 HPSQYYRSHGHHPGPNRRRICDQSRRDHDPYTGSCSFL 239
H + R +H NRR+IC R + Y C F+
Sbjct: 170 HHDENRRPSNNHGSSNRRQICHNFERGNCRYGPRCRFI 207
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -2
Query: 237 ENCRNQYKDHDRVVTDHKFCAGLVRDGGRDYDNTDLGAPAFFQNALVGIVSFGKSNSND- 61
E+CR + H V + H LV G++Y+N +G + + +L I S SN+ +
Sbjct: 2152 EHCRKAHVFHILVKSSHSTRGELVVTTGQEYENY-VGLKSVTRASLNSISSQRASNAGET 2210
Query: 60 AYPVVL 43
A P VL
Sbjct: 2211 AQPSVL 2216
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -2
Query: 237 ENCRNQYKDHDRVVTDHKFCAGLVRDGGRDYDNTDLGAPAFFQNALVGIVSFGKSNSND- 61
E+CR + H V + H LV G++Y+N +G + + +L I S SN+ +
Sbjct: 2152 EHCRKAHVFHILVKSSHSTRGELVVTTGQEYENY-VGLKSVTRASLNSISSQRASNAGET 2210
Query: 60 AYPVVL 43
A P VL
Sbjct: 2211 AQPSVL 2216
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,813,557
Number of Sequences: 27780
Number of extensions: 398831
Number of successful extensions: 1110
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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