Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10j15r
(643 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl... 32 0.28
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl... 32 0.28
At1g01150.1 68414.m00024 expressed protein ; expression supporte... 31 0.49
At5g62380.1 68418.m07829 no apical meristem (NAM) family protein... 30 1.1
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative... 29 2.6
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative... 29 2.6
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative... 29 2.6
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ... 29 3.5
At4g33600.1 68417.m04773 expressed protein 28 6.1
At4g11530.1 68417.m01850 protein kinase family protein contains ... 28 6.1
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 28 6.1
At3g06080.2 68416.m00695 expressed protein identical to unknown ... 27 8.0
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi... 27 8.0
>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 32.3 bits (70), Expect = 0.28
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 331 NTLGYYDTLLDNSTLLDIWAEVDGMCYSYDAHILV 435
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 32.3 bits (70), Expect = 0.28
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 331 NTLGYYDTLLDNSTLLDIWAEVDGMCYSYDAHILV 435
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At1g01150.1 68414.m00024 expressed protein ; expression supported
by MPSS
Length = 345
Score = 31.5 bits (68), Expect = 0.49
Identities = 24/106 (22%), Positives = 50/106 (47%)
Frame = +1
Query: 232 VFFVGHNEFELVEVAVRCTATLNGSSPSEQINKNTLGYYDTLLDNSTLLDIWAEVDGMCY 411
V + + E L E + + T+N + P ++I + G + T ++S L D W ++ +
Sbjct: 235 VLWTVNEEKMLREGVEKFSDTINKNMPWKKILEMGKGIFHTTRNSSDLKDKWRNMNYLDL 294
Query: 412 SYDAHILVVILLRELGMVNGKVNIRYFTWLTTTGRSSDNATVCRIV 549
+ I ++I++ E+G NG+ R + R+ +C +V
Sbjct: 295 -VEVEIDIIIVVAEIGDQNGEGKKRRSDEEDESNRNHPKIRICGMV 339
>At5g62380.1 68418.m07829 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
OsNAC7, Oryza sativa, EMBL:AB028186
Length = 348
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 156 GRDYDNTDLGAPAFFQNALVGIVSFGKSNSNDAYPVVLTSISSFTEWILQ 7
G Y DL +P FQ + +S N D Y VVL++I++ I+Q
Sbjct: 190 GNYYHLPDLESPRMFQGSSSSSLSSLHQNDQDPYGVVLSTINATPTTIMQ 239
>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 576 LKGSGSW*EQYQRTVGTIDSRW 641
+KG W +YQR GTID W
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYW 788
>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 576 LKGSGSW*EQYQRTVGTIDSRW 641
+KG W +YQR GTID W
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYW 788
>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 576 LKGSGSW*EQYQRTVGTIDSRW 641
+KG W +YQR GTID W
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYW 788
>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 446
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = -2
Query: 234 NCRNQYKDHDRVVTDHKFCAGLVRDGGRDYDNTDLGAPAFFQNALVGIVSFGKSNSN 64
+C + D +T FC L + R APA+ NAL V+ G N N
Sbjct: 175 DCGTLFSRKDSFITHRAFCDALAEESARFVSVPP--APAYLNNALDVEVNHGNINQN 229
>At4g33600.1 68417.m04773 expressed protein
Length = 453
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 637 LESMVPTVRWYCSHQLPLPFNXYLFPWRILR 545
L +MVP V W HQ P L+ W LR
Sbjct: 183 LSAMVPFVAWSLRHQCENPQRWVLYHWGELR 213
>At4g11530.1 68417.m01850 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 931
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = -2
Query: 639 ILNQWFQQCAGIVLTNYHYLSTXTCFHGEF-----YDPAYRRIIA 520
+LN F L + Y+ST TCF+G F YD RRI++
Sbjct: 2 MLNTLFLPIFLFFLITFDYVSTQTCFNGYFKPNGTYDLNRRRILS 46
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 284
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 284 ALPP*TVVPHPSRSTKIPWGITTPCWIIAPCWIFGP 391
A+PP ++ HPS + +G P I APC + P
Sbjct: 134 AMPPGSIPMHPSMPSYTYFGNQNPSMIPAPCPTYMP 169
>At3g06080.2 68416.m00695 expressed protein identical to unknown
protein GB:AAF30301 from [Arabidopsis thaliana]
Length = 469
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 114 RRQGHPSQYYRSHGHHPGPNRRRIC 188
R+ GHPS YY H P P R+ C
Sbjct: 402 RKDGHPSLYYLG-PHGPAPLHRQDC 425
>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 656
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 141 NTDLGAPAFFQNALVGIVSFGKSNSNDAYPVVLTSIS 31
N +G AF NA + FG SN YP +T +S
Sbjct: 479 NAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVS 515
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,935,040
Number of Sequences: 28952
Number of extensions: 370850
Number of successful extensions: 976
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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