Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j13r
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.63 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.63 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.4  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 209 MAVACSSQMH---PTIRASKQEGTRVGFSRVPADFFTTFML 322
           MAVAC    H   P +RAS +E T +  + V   +  TF+L
Sbjct: 531 MAVACLLFHHRDTPVVRASGRELTIILLAGVLVCYLNTFLL 571


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 209 MAVACSSQMH---PTIRASKQEGTRVGFSRVPADFFTTFML 322
           MAVAC    H   P +RAS +E T +  + V   +  TF+L
Sbjct: 621 MAVACLLFHHRDTPVVRASGRELTIILLAGVLVCYLNTFLL 661


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 248 VLLDAFVKNTLQPSP 204
           +LL +F++ TLQP P
Sbjct: 423 MLLYSFIEQTLQPGP 437


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 248 VLLDAFVKNTLQPSP 204
           +LL +F++ TLQP P
Sbjct: 423 MLLYSFIEQTLQPGP 437


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 269 YLPALMLVLLDAFVKNTLQPSP 204
           YLP  + +LL  F+  T  P+P
Sbjct: 809 YLPNSLRILLKRFLDITTPPTP 830


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,817
Number of Sequences: 438
Number of extensions: 3555
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)