Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10j13f
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1296.02 |cox4||cytochrome c oxidase subunit IV|Schizosacchar... 62 4e-11
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 27 2.5
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 27 2.5
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 3.3
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 26 3.3
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 5.8
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 25 7.7
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 25 7.7
>SPAC1296.02 |cox4||cytochrome c oxidase subunit
IV|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 62.5 bits (145), Expect = 4e-11
Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Frame = +2
Query: 107 GYADKMMPDPLEHATGLERKELLALQAGNDDPFNMKVVKKS-AGTRENPTLVPSCFDARI 283
G D +P LE ATGLER ELL+ +G D F+MK + S GT +P +V S R
Sbjct: 59 GGRDGEVPTDLEQATGLERYELLSELSGR-DAFDMKPLDASRKGTLTDPIMVTSLDPYRH 117
Query: 284 VGCICEEHAT-AITWLWLHKDQPRRC-ECGHWYKL 382
+GC + + W+ ++KD+ RRC ECG YKL
Sbjct: 118 IGCTGSPSGSHNLIWMTVYKDKLRRCPECGSVYKL 152
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 2.5
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = -3
Query: 287 QQYEHQSRKVPELGFHGFLL-TSSLPSC*RGHHCRPEGP-----GVPSFPSQWHVPRDQA 126
QQ +HQ +K P+ G + T+S P+ H + +GP +PS P P A
Sbjct: 270 QQKQHQQKKTPQSGSTPQMQNTTSQPTTHDTHPPKQQGPISDFRSIPSSPKTEGAP-SNA 328
Query: 125 SFCRHIPA 102
F +PA
Sbjct: 329 QFRPSLPA 336
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 361 LATA-RLVLV*PKPGDGCSVFFTNASNNT 278
LA A LV+V +PG GCS F + +++T
Sbjct: 183 LANAGELVMVLGQPGSGCSTFLRSVTSDT 211
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 26.2 bits (55), Expect = 3.3
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -2
Query: 264 EGTRVGFSRVPADFFTTFMLKGSSLPA*RARSSFLSKPVACSKGSGI 124
+GT + FS +P FT K +S A +SFLS ACSK S +
Sbjct: 591 DGTYL-FSYIPERLFTEKKPKNASKEI--AVTSFLSSHAACSKLSNV 634
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -3
Query: 197 HHCRPEGPGVPSFPSQWHVPRDQASFCRHIPA 102
HH + P P+ Q HVP H+P+
Sbjct: 309 HHSHDDDPSSPAEKKQNHVPSPSEKIQDHVPS 340
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 5.8
Identities = 21/83 (25%), Positives = 42/83 (50%)
Frame = -3
Query: 458 MRFVSAVTLLDNKLKELLFKGVASQSICTNVHTRNGAVGPCVTKAR*WL*RVLHKCIQQY 279
++ + A+ + N+ + F VA + V + G++ P VT + V+ +C+++
Sbjct: 532 LKMIQAIAAIPNEQYHIHFPEVALPA--NAVQEKEGSL-PGVTVGPDLM-DVMKRCLERD 587
Query: 278 EHQSRKVPELGFHGFLLTSSLPS 210
+ + +PEL H FL + LPS
Sbjct: 588 QRKRLTIPELLVHPFL--NPLPS 608
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 25.0 bits (52), Expect = 7.7
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 345 WSLCNQSQVMAVACSSQMH-PTIRASKQEGTRVGFSRVPADFFTTFMLK 202
W S+++ VA ++ M P S + +R+G SRVP + +T L+
Sbjct: 473 WPSLPHSRLIVVAVANTMDLPERILSNRISSRLGLSRVPFEPYTHTQLE 521
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 7.7
Identities = 15/73 (20%), Positives = 33/73 (45%)
Frame = -3
Query: 473 AVITTMRFVSAVTLLDNKLKELLFKGVASQSICTNVHTRNGAVGPCVTKAR*WL*RVLHK 294
++IT R + L +L + + A + + V + G C+ + W+ + +
Sbjct: 251 SIITDFRINIIIVLGSERLYSSMKRKYADATWLSVVKVSSS--GGCIDREEEWIQQFQAR 308
Query: 293 CIQQYEHQSRKVP 255
CI+QY + ++P
Sbjct: 309 CIKQYFYGDDRMP 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,391
Number of Sequences: 5004
Number of extensions: 54066
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -