Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10j13f
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80230.1 68414.m09389 cytochrome c oxidase family protein con...    47   8e-06
At3g15640.1 68416.m01983 cytochrome c oxidase family protein con...    46   1e-05
At1g52710.1 68414.m05954 cytochrome c oxidase-related similar to...    38   0.005
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea...    28   5.0  

>At1g80230.1 68414.m09389 cytochrome c oxidase family protein
           contains Pfam domain, PF01215: Cytochrome c oxidase
           subunit Vb
          Length = 171

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
 Frame = +2

Query: 65  ANAFRSVILPTARRGYADKMMPDPLEHATGLERKELLALQAGNDDPFNMKVVKKSAGTRE 244
           ++ F  +I   A      K + D +  ATG E++EL A   G     ++   +   GT+E
Sbjct: 47  SSIFSRLIGSAAADTAVKKRVEDVMPIATGHEKEELQAELEGRKLD-DIDFPEGPFGTKE 105

Query: 245 NPTLVPSCFDARIVGCICEEHATA--ITWLWLHKDQPRRCE-CGHWYKL 382
            P +V S +D RIVGC   E      + W WL K +   C  C  ++KL
Sbjct: 106 APAVVKSYYDMRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFKL 154


>At3g15640.1 68416.m01983 cytochrome c oxidase family protein
           contains Pfam domain, PF01215: Cytochrome c oxidase
           subunit Vb
          Length = 176

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
 Frame = +2

Query: 113 ADKMMPDPLEHATGLERKELLALQAGN--DDPFNMKVVKKSAGTRENPTLVPSCFDARIV 286
           A K + D +  ATG E++EL A   G   DD   +   +   GT+E P +V S +D RIV
Sbjct: 64  ATKKVEDVMPIATGHEKEELEAELEGRRLDD---IDFPEGPFGTKEAPAIVKSYYDKRIV 120

Query: 287 GCICEEHATA--ITWLWLHKDQPRRCE-CGHWYKL 382
           GC   E      + W WL K +   C  C  +++L
Sbjct: 121 GCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFEL 155


>At1g52710.1 68414.m05954 cytochrome c oxidase-related similar to
           SP|P00428 Cytochrome c oxidase polypeptide Vb (EC
           1.9.3.1) (VI) [Bovine] {Bos taurus}
          Length = 90

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 233 GTRENPTLVPSCFDARIVGCICEEHATA--ITWLWLHKDQPRRCE-CGHWYK 379
           GT+E+P +V S FD R +GC   E      + W WL K +   C  C  +++
Sbjct: 24  GTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGKSFECPVCSQYFE 75


>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to myosin heavy chain kinase B (gb:U90946)
           [Dictyostelium discoideum]
          Length = 469

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = +3

Query: 282 LLDAFVKNTLQPSPGFGYTRTNRAVASV 365
           LLD +++N++ PS  F +TR NR+ A++
Sbjct: 180 LLD-YIRNSIVPSSYFNFTRRNRSSAAL 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,166,527
Number of Sequences: 28952
Number of extensions: 297499
Number of successful extensions: 690
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)